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  5. lcl|LHPG02000026.1_cds_PRW18335.1_5824

lcl|LHPG02000026.1_cds_PRW18335.1_5824 (PRW18335)


Aliases : PRW18335

Description : TATA-binding-associated factor 172


Gene families : OG_01_0000017 (OrthoFinder) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000026.1_cds_PRW18335.1_5824
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
Cre03.g162701 30788203 Chromatin structure-remodeling complex protein SYD... 0.02 OrthoFinder
Cre12.g508150 30793288 Chromatin organisation.chromatin remodeling... 0.02 OrthoFinder
Dusal.0001s00013.1 33198814 SNF2-related, N-terminal domain; Helicase, C-terminal;... 0.02 OrthoFinder
Dusal.0752s00002.1 33199466 Domain of unknown function DUF3535; SNF2-related,... 0.03 OrthoFinder
EOD23118 No alias SNF2-related, N-terminal domain [Interproscan]. 0.02 OrthoFinder
OT_07G04020.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder
OT_12G02840.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.02 OrthoFinder
Sro1796_g298120.1 Contig441.g5925 Probable chromatin-remodeling complex ATPase chain 0.02 OrthoFinder
SymbC1.scaffold4675.1 4675.1 SNF2-related, N-terminal domain; Helicase, C-terminal... 0.03 OrthoFinder
Transcript_contig_67500 67500 Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder
Vocar.0004s0442.1 32889776 Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0002161 aminoacyl-tRNA editing activity IEP Enrichment
MF GO:0003997 acyl-CoA oxidase activity IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
CC GO:0005777 peroxisome IEP Enrichment
BP GO:0006334 nucleosome assembly IEP Enrichment
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006635 fatty acid beta-oxidation IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
MF GO:0008234 cysteine-type peptidase activity IEP Enrichment
BP GO:0009062 fatty acid catabolic process IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
BP GO:0016042 lipid catabolic process IEP Enrichment
BP GO:0016054 organic acid catabolic process IEP Enrichment
CC GO:0016592 mediator complex IEP Enrichment
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Enrichment
BP GO:0019395 fatty acid oxidation IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
BP GO:0030258 lipid modification IEP Enrichment
BP GO:0034440 lipid oxidation IEP Enrichment
BP GO:0034728 nucleosome organization IEP Enrichment
MF GO:0042578 phosphoric ester hydrolase activity IEP Enrichment
CC GO:0042579 microbody IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044242 cellular lipid catabolic process IEP Enrichment
BP GO:0046395 carboxylic acid catabolic process IEP Enrichment
BP GO:0065004 protein-DNA complex assembly IEP Enrichment
MF GO:0070403 NAD+ binding IEP Enrichment
BP GO:0071824 protein-DNA complex subunit organization IEP Enrichment
BP GO:0072329 monocarboxylic acid catabolic process IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR000330 SNF2_N 1478 1774
IPR022707 Mot1_central_dom 807 1255
IPR001650 Helicase_C 1850 1949
No external refs found!