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  5. lcl|LHPG02000025.1_cds_PRW20239.1_5726

lcl|LHPG02000025.1_cds_PRW20239.1_5726 (PRW20239)


Aliases : PRW20239

Description : ATP-dependent RNA helicase DHX36


Gene families : OG_01_0000129 (OrthoFinder) Phylogenetic Tree(s): OG0000129_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000025.1_cds_PRW20239.1_5726
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021094.26 tig00021094_g18111.t1 DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre06.g266416 30779154 DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.02 OrthoFinder
EOD09487 No alias Helicase, C-terminal; Helicase-associated domain; Domain... 0.01 OrthoFinder
EOD37379 No alias Helicase, C-terminal; Helicase-associated domain [Interproscan]. 0.02 OrthoFinder
OT_02G03850.1 No alias Helicase-associated domain; Helicase, C-terminal;... 0.02 OrthoFinder
OT_02G05340.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain; RWD... 0.03 OrthoFinder
PTI_10G01300.1 No alias DEAD/DEAH box helicase domain [Interproscan]. 0.03 OrthoFinder
XM_002503731.1 MICPUN_59722, 59722 Helicase, C-terminal; Helicase-associated domain; Domain... 0.02 OrthoFinder
XM_002506086.1 MICPUN_88188, 88188 Helicase, C-terminal; Helicase-associated domain;... 0.02 OrthoFinder
XM_002507013.1 MICPUN_77912, 77912 Helicase, C-terminal; Helicase-associated domain;... 0.03 OrthoFinder
XM_003060901.1 MicpuC2_197, 197 Helicase, C-terminal; Helicase-associated domain; Domain... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
BP GO:0002097 tRNA wobble base modification IEP Enrichment
BP GO:0002098 tRNA wobble uridine modification IEP Enrichment
MF GO:0004843 thiol-dependent deubiquitinase IEP Enrichment
MF GO:0005319 lipid transporter activity IEP Enrichment
MF GO:0005548 phospholipid transporter activity IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
BP GO:0006869 lipid transport IEP Enrichment
BP GO:0007009 plasma membrane organization IEP Enrichment
CC GO:0008023 transcription elongation factor complex IEP Enrichment
MF GO:0008242 omega peptidase activity IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0015748 organophosphate ester transport IEP Enrichment
BP GO:0015914 phospholipid transport IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
BP GO:0017121 plasma membrane phospholipid scrambling IEP Enrichment
MF GO:0017128 phospholipid scramblase activity IEP Enrichment
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
MF GO:0031625 ubiquitin protein ligase binding IEP Enrichment
CC GO:0033588 elongator holoenzyme complex IEP Enrichment
BP GO:0034204 lipid translocation IEP Enrichment
MF GO:0044389 ubiquitin-like protein ligase binding IEP Enrichment
BP GO:0045332 phospholipid translocation IEP Enrichment
BP GO:0061024 membrane organization IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
BP GO:0097035 regulation of membrane lipid distribution IEP Enrichment
MF GO:0101005 deubiquitinase activity IEP Enrichment
MF GO:0140303 intramembrane lipid transporter activity IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
InterPro domains Description Start Stop
IPR011709 DUF1605 978 1073
IPR011545 DEAD/DEAH_box_helicase_dom 239 393
IPR007502 Helicase-assoc_dom 819 902
IPR001374 R3H_dom 33 90
IPR001650 Helicase_C 633 751
No external refs found!