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  5. lcl|LHPG02000025.1_cds_PRW20220.1_5634

lcl|LHPG02000025.1_cds_PRW20220.1_5634 (PRW20220)


Aliases : PRW20220

Description : U2 small nuclear ribonucleo B-like


Gene families : OG_01_0002817 (OrthoFinder) Phylogenetic Tree(s): OG0002817_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000025.1_cds_PRW20220.1_5634
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
Cre13.g566700 30784051 RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder
EOD13692 No alias RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
Vocar.0001s1517.1 32884731 RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
CC GO:0000178 exosome (RNase complex) IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004190 aspartic-type endopeptidase activity IEP Enrichment
MF GO:0004379 glycylpeptide N-tetradecanoyltransferase activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005741 mitochondrial outer membrane IEP Enrichment
BP GO:0006269 DNA replication, synthesis of RNA primer IEP Enrichment
BP GO:0006333 chromatin assembly or disassembly IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006605 protein targeting IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
BP GO:0016485 protein processing IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019107 myristoyltransferase activity IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
CC GO:0031966 mitochondrial membrane IEP Enrichment
CC GO:0031968 organelle outer membrane IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
MF GO:0043565 sequence-specific DNA binding IEP Enrichment
MF GO:0051082 unfolded protein binding IEP Enrichment
BP GO:0051604 protein maturation IEP Enrichment
MF GO:0070001 aspartic-type peptidase activity IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:0098588 bounding membrane of organelle IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
CC GO:1905354 exoribonuclease complex IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 10 80
IPR000504 RRM_dom 155 214
No external refs found!