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  5. lcl|LHPG02000025.1_cds_PRW20199.1_5716

lcl|LHPG02000025.1_cds_PRW20199.1_5716 (PRW20199)


Aliases : PRW20199

Description : Formamidopyrimidine-DNA glycosylase isoform X2


Gene families : OG_01_0003087 (OrthoFinder) Phylogenetic Tree(s): OG0003087_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000025.1_cds_PRW20199.1_5716
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
Transcript_contig_55862 55862 DNA glycosylase/AP lyase, H2TH DNA-binding;... 0.02 OrthoFinder
Vocar.0005s0225.1 32883971 Formamidopyrimidine-DNA glycosylase, catalytic domain;... 0.02 OrthoFinder
XM_002503591.1 MICPUN_60143, 60143 DNA glycosylase/AP lyase, H2TH DNA-binding;... 0.02 OrthoFinder
lcl|BLLF01000775.1_cds_GFH14858.1_9335 HaLaN_10985, GFH14858 H2TH domain-containing protein 0.02 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495576.1_1574 KAA8495576 Formamidopyrimidine-DNA glycosylase 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEA Interproscan
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEA Interproscan
BP GO:0006284 base-excision repair IEA Interproscan
BP GO:0006289 nucleotide-excision repair IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint signaling IEP Enrichment
BP GO:0000077 DNA damage checkpoint signaling IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0004806 triglyceride lipase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006066 alcohol metabolic process IEP Enrichment
BP GO:0006468 protein phosphorylation IEP Enrichment
BP GO:0006729 tetrahydrobiopterin biosynthetic process IEP Enrichment
MF GO:0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity IEP Enrichment
BP GO:0010564 regulation of cell cycle process IEP Enrichment
BP GO:0010948 negative regulation of cell cycle process IEP Enrichment
BP GO:0010970 transport along microtubule IEP Enrichment
MF GO:0015399 primary active transmembrane transporter activity IEP Enrichment
MF GO:0016298 lipase activity IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0019751 polyol metabolic process IEP Enrichment
MF GO:0022804 active transmembrane transporter activity IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
BP GO:0030705 cytoskeleton-dependent intracellular transport IEP Enrichment
CC GO:0030896 checkpoint clamp complex IEP Enrichment
BP GO:0031503 protein-containing complex localization IEP Enrichment
BP GO:0031570 DNA integrity checkpoint signaling IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0034311 diol metabolic process IEP Enrichment
BP GO:0034312 diol biosynthetic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042073 intraciliary transport IEP Enrichment
BP GO:0042558 pteridine-containing compound metabolic process IEP Enrichment
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Enrichment
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP Enrichment
BP GO:0042770 signal transduction in response to DNA damage IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0045786 negative regulation of cell cycle IEP Enrichment
BP GO:0046146 tetrahydrobiopterin metabolic process IEP Enrichment
BP GO:0046165 alcohol biosynthetic process IEP Enrichment
BP GO:0046173 polyol biosynthetic process IEP Enrichment
BP GO:0048523 negative regulation of cellular process IEP Enrichment
MF GO:0052689 carboxylic ester hydrolase activity IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:0099111 microtubule-based transport IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Enrichment
BP GO:1901987 regulation of cell cycle phase transition IEP Enrichment
BP GO:1901988 negative regulation of cell cycle phase transition IEP Enrichment
InterPro domains Description Start Stop
IPR015886 DNA_glyclase/AP_lyase_DNA-bd 145 231
IPR012319 FPG_cat 1 130
No external refs found!