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  5. lcl|LHPG02000024.1_cds_PRW20375.1_5582

lcl|LHPG02000024.1_cds_PRW20375.1_5582 (PRW20375)


Aliases : PRW20375

Description : 40S ribosomal S7 isoform A


Gene families : OG_01_0003112 (OrthoFinder) Phylogenetic Tree(s): OG0003112_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000024.1_cds_PRW20375.1_5582
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021682.9 tig00021682_g23099.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.23 OrthoFinder
Cre12.g498900 30792089, RPS7 Protein biosynthesis.cytosolic ribosome.small subunit... 0.21 OrthoFinder
Cz02g24040.t1 No alias Ribosomal protein S7e [Interproscan]. 0.05 OrthoFinder
Dusal.0024s00020.1 33202211 Ribosomal protein S7e [Interproscan]. 0.05 OrthoFinder
EOD37465 No alias Ribosomal protein S7e; High mobility group box domain... 0.02 OrthoFinder
OT_09G03160.1 No alias Ribosomal protein S7e [Interproscan]. 0.16 OrthoFinder
PTI_28G01270.1 No alias Ribosomal protein S7e [Interproscan]. 0.19 OrthoFinder
Sro730_g194010.1 Contig80.g833 40S ribosomal protein S7 0.18 OrthoFinder
SymbC1.scaffold1753.10 1753.10 Ribosomal protein S7e [Interproscan]. 0.05 OrthoFinder
TP02G05030.1 No alias Ribosomal protein S7e [Interproscan]. 0.16 OrthoFinder
Vocar.0006s0277.1 32894204 Ribosomal protein S7e [Interproscan]. 0.09 OrthoFinder
XM_002508754.1 MICPUN_91845, 91845 Ribosomal protein S7e [Interproscan]. 0.16 OrthoFinder
XM_003056772.1 MicpuC2_46695, 46695 Ribosomal protein S7e [Interproscan]. 0.07 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494704.1_3234 KAA8494704 40S ribosomal protein S7 0.1 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
MF GO:0016872 intramolecular lyase activity IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
MF GO:0043565 sequence-specific DNA binding IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
InterPro domains Description Start Stop
IPR003609 Pan_app 1285 1336
IPR003609 Pan_app 1203 1253
IPR000554 Ribosomal_S7e 34 229
IPR024535 Pectate_lyase_SF_prot 617 705
No external refs found!