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  5. lcl|LHPG02000024.1_cds_PRW20371.1_5557

lcl|LHPG02000024.1_cds_PRW20371.1_5557 (PRW20371)


Aliases : PRW20371

Description : 60S ribosomal L7-2


Gene families : OG_01_0002109 (OrthoFinder) Phylogenetic Tree(s): OG0002109_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000024.1_cds_PRW20371.1_5557
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020909.42 tig00020909_g15363.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.3 OrthoFinder
Cre12.g537800 30791776, RPL7 Protein biosynthesis.cytosolic ribosome.large subunit... 0.37 OrthoFinder
Cz10g26010.t1 No alias Hypothetical protein 0.14 OrthoFinder
Dusal.1371s00001.1 33191881 Ribosomal protein L30, ferredoxin-like fold domain;... 0.3 OrthoFinder
EOD11472 No alias Ribosomal protein L30, N-terminal; Ribosomal protein... 0.23 OrthoFinder
EOD41169 No alias Ribosomal protein L30, N-terminal; Ribosomal protein... 0.23 OrthoFinder
OT_03G01610.1 No alias Ribosomal protein L30, N-terminal; Ribosomal protein... 0.18 OrthoFinder
PTI_19G01830.1 No alias Ribosomal protein L30, ferredoxin-like fold domain;... 0.35 OrthoFinder
Sro264_g102550.1 Contig921.g9681 60S ribosomal protein L7 0.41 OrthoFinder
SymbC1.scaffold4779.1 4779.1 Ribosomal protein L30, ferredoxin-like fold domain;... 0.02 OrthoFinder
SymbC1.scaffold680.2 680.2 Ribosomal protein L30, ferredoxin-like fold domain;... 0.12 OrthoFinder
TP02G06700.1 No alias Ribosomal protein L30, ferredoxin-like fold domain;... 0.29 OrthoFinder
Vocar.0034s0005.1 32893109 Ribosomal protein L30, N-terminal; Ribosomal protein... 0.11 OrthoFinder
XM_002500889.1 MICPUN_106801, 106801 Ribosomal protein L30, ferredoxin-like fold domain;... 0.24 OrthoFinder
XM_003056432.1 MicpuC2_31664, 31664 Ribosomal protein L30, ferredoxin-like fold domain;... 0.02 OrthoFinder
lcl|BLLF01000405.1_cds_GFH11454.1_5931 HaLaN_06953, GFH11454 Ribosomal protein L30, N-terminal [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01000775.1_cds_GFH14862.1_9339 HaLaN_10989, GFH14862 Ribosomal protein L30, ferredoxin-like fold domain;... 0.06 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499623.1_8576 KAA8499623 60S ribosomal protein L7-4 0.14 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
MF GO:0043565 sequence-specific DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0004392 heme oxygenase (decyclizing) activity IEP Enrichment
MF GO:0005047 signal recognition particle binding IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005785 signal recognition particle receptor complex IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
CC GO:0005875 microtubule associated complex IEP Enrichment
BP GO:0006359 regulation of transcription by RNA polymerase III IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006658 phosphatidylserine metabolic process IEP Enrichment
BP GO:0006659 phosphatidylserine biosynthetic process IEP Enrichment
BP GO:0006788 heme oxidation IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009890 negative regulation of biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
BP GO:0016480 negative regulation of transcription by RNA polymerase III IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
CC GO:0030286 dynein complex IEP Enrichment
BP GO:0031324 negative regulation of cellular metabolic process IEP Enrichment
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0042168 heme metabolic process IEP Enrichment
BP GO:0042440 pigment metabolic process IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
BP GO:0045892 negative regulation of transcription, DNA-templated IEP Enrichment
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051253 negative regulation of RNA metabolic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
BP GO:1902679 negative regulation of RNA biosynthetic process IEP Enrichment
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP Enrichment
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR016082 Ribosomal_L30_ferredoxin-like 82 132
IPR000679 Znf_GATA 290 324
IPR012988 Ribosomal_L30_N 6 77
No external refs found!