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  5. lcl|LHPG02000023.1_cds_PRW20561.1_5415

lcl|LHPG02000023.1_cds_PRW20561.1_5415 (PRW20561)


Aliases : PRW20561

Description : T-complex 1 subunit epsilon


Gene families : OG_01_0002989 (OrthoFinder) Phylogenetic Tree(s): OG0002989_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000023.1_cds_PRW20561.1_5415
Cluster HCCA: Cluster_95

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000571.47 tig00000571_g2200.t1 Cytoskeleton.actin and tubulin folding.CCT chaperonin... 0.02 OrthoFinder
Cre03.g156750 30786785, CCT5 Cytoskeleton.actin and tubulin folding.CCT chaperonin... 0.09 OrthoFinder
Cz14g22090.t1 No alias Chaperonin Cpn60/TCP-1 family [Interproscan]. 0.07 OrthoFinder
Dusal.0218s00013.1 33202716 Chaperonin Cpn60/TCP-1 family [Interproscan]. 0.04 OrthoFinder
EOD41457 No alias Chaperonin Cpn60/TCP-1 family [Interproscan]. 0.04 OrthoFinder
OT_03G01480.1 No alias Chaperonin Cpn60/TCP-1 family [Interproscan]. 0.06 OrthoFinder
PTI_12G03650.1 No alias Chaperonin Cpn60/TCP-1 family [Interproscan]. 0.05 OrthoFinder
Sro759_g198220.1 Contig608.g7522 Thermosome subunit beta (Fragment) 0.06 OrthoFinder
TP06G03230.1 No alias Chaperonin Cpn60/TCP-1 family [Interproscan]. 0.03 OrthoFinder
Vocar.0019s0089.1 32892724 Chaperonin Cpn60/TCP-1 family [Interproscan]. 0.05 OrthoFinder
XM_002501277.1 MICPUN_93952, 93952 Chaperonin Cpn60/TCP-1 family [Interproscan]. 0.04 OrthoFinder
XM_003062357.1 MicpuC2_49719, 49719 Chaperonin Cpn60/TCP-1 family [Interproscan]. 0.03 OrthoFinder
lcl|BLLF01003958.1_cds_GFH28614.1_23091 HaLaN_27137, GFH28614 T-complex protein, epsilon subunit 0.04 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498129.1_7082 KAA8498129 T-complex protein 1 subunit epsilon 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Enrichment
BP GO:0000105 histidine biosynthetic process IEP Enrichment
MF GO:0000287 magnesium ion binding IEP Enrichment
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0003855 3-dehydroquinate dehydratase activity IEP Enrichment
MF GO:0003879 ATP phosphoribosyltransferase activity IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0004379 glycylpeptide N-tetradecanoyltransferase activity IEP Enrichment
MF GO:0004594 pantothenate kinase activity IEP Enrichment
MF GO:0004674 protein serine/threonine kinase activity IEP Enrichment
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004826 phenylalanine-tRNA ligase activity IEP Enrichment
MF GO:0005047 signal recognition particle binding IEP Enrichment
MF GO:0005048 signal sequence binding IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006432 phenylalanyl-tRNA aminoacylation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006547 histidine metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008312 7S RNA binding IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
BP GO:0015936 coenzyme A metabolic process IEP Enrichment
BP GO:0015937 coenzyme A biosynthetic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0019107 myristoyltransferase activity IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
BP GO:0022618 ribonucleoprotein complex assembly IEP Enrichment
MF GO:0030942 endoplasmic reticulum signal peptide binding IEP Enrichment
MF GO:0031072 heat shock protein binding IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0033866 nucleoside bisphosphate biosynthetic process IEP Enrichment
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0034030 ribonucleoside bisphosphate biosynthetic process IEP Enrichment
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0034033 purine nucleoside bisphosphate biosynthetic process IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0042277 peptide binding IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
CC GO:0048500 signal recognition particle IEP Enrichment
MF GO:0051082 unfolded protein binding IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR002423 Cpn60/TCP-1 40 531
No external refs found!