lcl|LHPG02000022.1_cds_PRW20750.1_5231 (PRW20750)
Aliases : PRW20750
Description : 40S ribosomal S5
Gene families : OG_01_0003369 (OrthoFinder) Phylogenetic Tree(s): OG0003369_tree
Expression Profile
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Co-expression Networks
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: lcl|LHPG02000022.1_cds_PRW20750.1_5231 | |
| Cluster | HCCA: Cluster_23 |
Expression Context Conservation (ECC)
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00021332.10 | tig00021332_g20326.t1 | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.23 | OrthoFinder | |
| Cre06.g290950 | 30779633, RPS5 | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.36 | OrthoFinder | |
| Cz11g15220.t1 | No alias | Ribosomal protein S7 domain [Interproscan]. | 0.23 | OrthoFinder | |
| Dusal.0524s00007.1 | 33201137 | Ribosomal protein S7 domain [Interproscan]. | 0.24 | OrthoFinder | |
| EOD09941 | No alias | Ribosomal protein S7 domain [Interproscan]. | 0.14 | OrthoFinder | |
| OT_07G00060.1 | No alias | Ribosomal protein S7 domain [Interproscan]. | 0.15 | OrthoFinder | |
| PTI_15G01120.1 | No alias | Ribosomal protein S7 domain [Interproscan]. | 0.24 | OrthoFinder | |
| Sro1048_g235290.1 | Contig3784.g29053 | 40S ribosomal protein S5 (Fragment) | 0.3 | OrthoFinder | |
| SymbC1.scaffold917.7 | 917.7 | Ribosomal protein S7 domain [Interproscan]. | 0.06 | OrthoFinder | |
| TP14G00980.1 | No alias | Ribosomal protein S7 domain [Interproscan]. | 0.23 | OrthoFinder | |
| Transcript_contig_90641 | 90641 | Ribosomal protein S7 domain [Interproscan]. | 0.04 | OrthoFinder | |
| Vocar.0001s1421.1 | 32884790 | Ribosomal protein S7 domain [Interproscan]. | 0.12 | OrthoFinder | |
| XM_002501532.1 | MICPUN_90425, 90425 | Ribosomal protein S7 domain [Interproscan]. | 0.21 | OrthoFinder | |
| XM_003062230.1 | MicpuC2_48485, 48485 | Ribosomal protein S7 domain [Interproscan]. | 0.12 | OrthoFinder | |
| lcl|VRMN01000001.1_cds_KAA8497970.1_6923 | KAA8497970 | 40S ribosomal protein S5 | 0.11 | OrthoFinder |
Functional Annotation
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000786 | nucleosome | IEP | Enrichment |
| MF | GO:0003674 | molecular_function | IEP | Enrichment |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Enrichment |
| MF | GO:0004392 | heme oxygenase (decyclizing) activity | IEP | Enrichment |
| MF | GO:0005198 | structural molecule activity | IEP | Enrichment |
| CC | GO:0005575 | cellular_component | IEP | Enrichment |
| CC | GO:0005840 | ribosome | IEP | Enrichment |
| BP | GO:0006412 | translation | IEP | Enrichment |
| BP | GO:0006518 | peptide metabolic process | IEP | Enrichment |
| BP | GO:0006788 | heme oxidation | IEP | Enrichment |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0006873 | cellular ion homeostasis | IEP | Enrichment |
| BP | GO:0006875 | cellular metal ion homeostasis | IEP | Enrichment |
| BP | GO:0006879 | cellular iron ion homeostasis | IEP | Enrichment |
| BP | GO:0008150 | biological_process | IEP | Enrichment |
| BP | GO:0008152 | metabolic process | IEP | Enrichment |
| MF | GO:0008199 | ferric iron binding | IEP | Enrichment |
| MF | GO:0008430 | selenium binding | IEP | Enrichment |
| BP | GO:0009058 | biosynthetic process | IEP | Enrichment |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:0009987 | cellular process | IEP | Enrichment |
| BP | GO:0019538 | protein metabolic process | IEP | Enrichment |
| MF | GO:0019843 | rRNA binding | IEP | Enrichment |
| BP | GO:0030003 | cellular cation homeostasis | IEP | Enrichment |
| CC | GO:0032993 | protein-DNA complex | IEP | Enrichment |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:0042168 | heme metabolic process | IEP | Enrichment |
| BP | GO:0042440 | pigment metabolic process | IEP | Enrichment |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Enrichment |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Enrichment |
| CC | GO:0043226 | organelle | IEP | Enrichment |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Enrichment |
| CC | GO:0043229 | intracellular organelle | IEP | Enrichment |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Enrichment |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Enrichment |
| BP | GO:0043604 | amide biosynthetic process | IEP | Enrichment |
| BP | GO:0044237 | cellular metabolic process | IEP | Enrichment |
| BP | GO:0044238 | primary metabolic process | IEP | Enrichment |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Enrichment |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Enrichment |
| BP | GO:0044267 | cellular protein metabolic process | IEP | Enrichment |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Enrichment |
| CC | GO:0044815 | DNA packaging complex | IEP | Enrichment |
| BP | GO:0046916 | cellular transition metal ion homeostasis | IEP | Enrichment |
| BP | GO:0048878 | chemical homeostasis | IEP | Enrichment |
| BP | GO:0050801 | ion homeostasis | IEP | Enrichment |
| BP | GO:0055065 | metal ion homeostasis | IEP | Enrichment |
| BP | GO:0055072 | iron ion homeostasis | IEP | Enrichment |
| BP | GO:0055076 | transition metal ion homeostasis | IEP | Enrichment |
| BP | GO:0055080 | cation homeostasis | IEP | Enrichment |
| BP | GO:0055082 | cellular chemical homeostasis | IEP | Enrichment |
| BP | GO:0071704 | organic substance metabolic process | IEP | Enrichment |
| BP | GO:0098771 | inorganic ion homeostasis | IEP | Enrichment |
| CC | GO:0110165 | cellular anatomical entity | IEP | Enrichment |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Enrichment |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR023798 | Ribosomal_S7_dom | 51 | 193 |
External Links
| No external refs found! |