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Aliases : PRW20625
Description : 60S ribosomal L30
Gene families : OG_01_0003786 (OrthoFinder) Phylogenetic Tree(s): OG0003786_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: lcl|LHPG02000022.1_cds_PRW20625.1_5215 | |
| Cluster | HCCA: Cluster_23 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00001164.6 | tig00001164_g7396.t1 | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.12 | OrthoFinder | |
| Cre10.g420750 | 30790763, RPL30 | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.34 | OrthoFinder | |
| Dusal.0308s00002.1 | 33194619 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan]. | 0.11 | OrthoFinder | |
| EOD38147 | No alias | Putative ribosomal protein L30 [Ensembl]. | 0.08 | OrthoFinder | |
| OT_17G01970.1 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan]. | 0.09 | OrthoFinder | |
| PTI_03G00930.1 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan]. | 0.12 | OrthoFinder | |
| Sro580_g170070.1 | Contig2039.g17522 | 60S ribosomal protein L30 | 0.27 | OrthoFinder | |
| TP08G03670.1 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan]. | 0.29 | OrthoFinder | |
| Vocar.0016s0044.1 | 32898101 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan]. | 0.21 | OrthoFinder | |
| XM_002502647.1 | MICPUN_94345, 94345 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan]. | 0.14 | OrthoFinder | |
| XM_003064220.1 | MicpuC2_49144, 49144 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan]. | 0.03 | OrthoFinder | |
| lcl|BLLF01002655.1_cds_GFH24873.1_19350 | HaLaN_22743, GFH24873 | Ribosomal_L7Ae domain-containing protein | 0.11 | OrthoFinder | |
| lcl|VRMN01000007.1_cds_KAA8493323.1_9624 | KAA8493323 | 60S ribosomal protein L30 | 0.17 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000786 | nucleosome | IEP | Enrichment |
| MF | GO:0003674 | molecular_function | IEP | Enrichment |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Enrichment |
| MF | GO:0004392 | heme oxygenase (decyclizing) activity | IEP | Enrichment |
| MF | GO:0005198 | structural molecule activity | IEP | Enrichment |
| CC | GO:0005575 | cellular_component | IEP | Enrichment |
| CC | GO:0005840 | ribosome | IEP | Enrichment |
| BP | GO:0006412 | translation | IEP | Enrichment |
| BP | GO:0006518 | peptide metabolic process | IEP | Enrichment |
| BP | GO:0006788 | heme oxidation | IEP | Enrichment |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0008150 | biological_process | IEP | Enrichment |
| BP | GO:0008152 | metabolic process | IEP | Enrichment |
| BP | GO:0008272 | sulfate transport | IEP | Enrichment |
| MF | GO:0008430 | selenium binding | IEP | Enrichment |
| BP | GO:0009058 | biosynthetic process | IEP | Enrichment |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:0009987 | cellular process | IEP | Enrichment |
| MF | GO:0015116 | sulfate transmembrane transporter activity | IEP | Enrichment |
| BP | GO:0019538 | protein metabolic process | IEP | Enrichment |
| CC | GO:0032993 | protein-DNA complex | IEP | Enrichment |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:0042168 | heme metabolic process | IEP | Enrichment |
| BP | GO:0042440 | pigment metabolic process | IEP | Enrichment |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Enrichment |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Enrichment |
| CC | GO:0043226 | organelle | IEP | Enrichment |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Enrichment |
| CC | GO:0043229 | intracellular organelle | IEP | Enrichment |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Enrichment |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Enrichment |
| BP | GO:0043604 | amide biosynthetic process | IEP | Enrichment |
| BP | GO:0044237 | cellular metabolic process | IEP | Enrichment |
| BP | GO:0044238 | primary metabolic process | IEP | Enrichment |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Enrichment |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Enrichment |
| BP | GO:0044267 | cellular protein metabolic process | IEP | Enrichment |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Enrichment |
| CC | GO:0044815 | DNA packaging complex | IEP | Enrichment |
| BP | GO:0071704 | organic substance metabolic process | IEP | Enrichment |
| BP | GO:0072348 | sulfur compound transport | IEP | Enrichment |
| CC | GO:0110165 | cellular anatomical entity | IEP | Enrichment |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Enrichment |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Enrichment |
| MF | GO:1901682 | sulfur compound transmembrane transporter activity | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR004038 | Ribosomal_L7Ae/L30e/S12e/Gad45 | 13 | 105 |
| No external refs found! |