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  5. lcl|LHPG02000021.1_cds_PRW20956.1_5003

lcl|LHPG02000021.1_cds_PRW20956.1_5003 (PRW20956)


Aliases : PRW20956

Description : Squamosa promoter-binding 8


Gene families : OG_01_0000101 (OrthoFinder) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000021.1_cds_PRW20956.1_5003
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
Cre02.g085150 30786461 RNA biosynthesis.transcriptional activation.SBP... 0.03 OrthoFinder
Transcript_contig_57709 57709 SBP domain [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01000397.1_cds_GFH11376.1_5853 HaLaN_06863, GFH11376 SBP domain; BTB/POZ domain [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000009.1_cds_PRW56339.1_10103 PRW56339 Squamosa promoter-binding 2 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0042025 host cell nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004356 glutamate-ammonia ligase activity IEP Enrichment
BP GO:0006541 glutamine metabolic process IEP Enrichment
BP GO:0006542 glutamine biosynthetic process IEP Enrichment
BP GO:0007049 cell cycle IEP Enrichment
MF GO:0016211 ammonia ligase activity IEP Enrichment
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Enrichment
BP GO:0022414 reproductive process IEP Enrichment
BP GO:0051321 meiotic cell cycle IEP Enrichment
InterPro domains Description Start Stop
IPR004333 SBP_dom 3 61
No external refs found!