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  5. lcl|LHPG02000020.1_cds_PRW21048.1_4816

lcl|LHPG02000020.1_cds_PRW21048.1_4816 (PRW21048)


Aliases : PRW21048

Description : 40S ribosomal S10


Gene families : OG_01_0003431 (OrthoFinder) Phylogenetic Tree(s): OG0003431_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000020.1_cds_PRW21048.1_4816
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001164.5 tig00001164_g7395.t1 40S ribosomal protein S10-2 OS=Oryza sativa subsp. japonica 0.31 OrthoFinder
Cre09.g411100 30781073, RPS10 Protein biosynthesis.cytosolic ribosome.small subunit... 0.16 OrthoFinder
Cz05g11070.t1 No alias Plectin/S10, N-terminal [Interproscan]. 0.22 OrthoFinder
Dusal.0053s00007.1 33186577 Plectin/S10, N-terminal [Interproscan]. 0.21 OrthoFinder
EOD07351 No alias Plectin/S10, N-terminal [Interproscan]. 0.06 OrthoFinder
EOD26565 No alias Plectin/S10, N-terminal [Interproscan]. 0.06 OrthoFinder
EOD33155 No alias Plectin/S10, N-terminal [Interproscan]. 0.07 OrthoFinder
OT_01G00990.1 No alias Plectin/S10, N-terminal [Interproscan]. 0.28 OrthoFinder
PTI_09G04580.1 No alias Plectin/S10, N-terminal [Interproscan]. 0.27 OrthoFinder
Sro128_g061360.1 Contig1654.g14912 40S ribosomal protein S10 0.31 OrthoFinder
TP04G01520.1 No alias Plectin/S10, N-terminal [Interproscan]. 0.28 OrthoFinder
Vocar.0008s0151.1 32897202 Plectin/S10, N-terminal [Interproscan]. 0.2 OrthoFinder
XM_002500912.1 MICPUN_90249, 90249 Plectin/S10, N-terminal [Interproscan]. 0.13 OrthoFinder
XM_003056116.1 MicpuC2_55703, 55703 40S ribosomal protein S10 (RPS10) 0.11 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496384.1_113 KAA8496384 40S ribosomal protein S10 0.09 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004392 heme oxygenase (decyclizing) activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006658 phosphatidylserine metabolic process IEP Enrichment
BP GO:0006659 phosphatidylserine biosynthetic process IEP Enrichment
BP GO:0006788 heme oxidation IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0042168 heme metabolic process IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Enrichment
BP GO:0042440 pigment metabolic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR005326 S10_plectin_N 3 94
No external refs found!