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  5. lcl|LHPG02000019.1_cds_PRW32682.1_4069

lcl|LHPG02000019.1_cds_PRW32682.1_4069 (PRW32682)


Aliases : PRW32682

Description : UPF0661 TPR repeat-containing-like


Gene families : OG_01_0003295 (OrthoFinder) Phylogenetic Tree(s): OG0003295_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000019.1_cds_PRW32682.1_4069
Cluster HCCA: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
Cre02.g103050 30786009 No description available 0.06 OrthoFinder
Cz04g10010.t1 No alias Hypothetical protein 0.05 OrthoFinder
EOD07498 No alias Hypothetical protein [Ensembl]. 0.02 OrthoFinder
EOD11769 No alias Hypothetical protein [Ensembl]. 0.02 OrthoFinder
OT_04G04430.1 No alias Tetratricopeptide repeat [Interproscan]. 0.04 OrthoFinder
PTI_12G01410.1 No alias Hypothetical protein 0.03 OrthoFinder
Transcript_contig_57370 57370 Tetratricopeptide repeat [Interproscan]. 0.04 OrthoFinder
XM_002507379.1 MICPUN_54824, 54824 Hypothetical protein 0.04 OrthoFinder
XM_003055282.1 MicpuC2_49825, 49825 Hypothetical protein 0.04 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000469 cleavage involved in rRNA processing IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0005991 trehalose metabolic process IEP Enrichment
BP GO:0005992 trehalose biosynthetic process IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0009312 oligosaccharide biosynthetic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0016426 tRNA (adenine) methyltransferase activity IEP Enrichment
MF GO:0016429 tRNA (adenine-N1-)-methyltransferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0030488 tRNA methylation IEP Enrichment
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Enrichment
CC GO:0034708 methyltransferase complex IEP Enrichment
BP GO:0042274 ribosomal small subunit biogenesis IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
CC GO:0043527 tRNA methyltransferase complex IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0046351 disaccharide biosynthetic process IEP Enrichment
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Enrichment
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Enrichment
CC GO:1990234 transferase complex IEP Enrichment

No InterPro domains available for this sequence

No external refs found!