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  5. lcl|LHPG02000019.1_cds_PRW32602.1_3917

lcl|LHPG02000019.1_cds_PRW32602.1_3917 (PRW32602)


Aliases : PRW32602

Description : NHL repeat-containing 2 isoform C


Gene families : OG_01_0000024 (OrthoFinder) Phylogenetic Tree(s): OG0000024_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000019.1_cds_PRW32602.1_3917
Cluster HCCA: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000076.118 tig00000076_g2415.t1 Protein SUPPRESSOR OF QUENCHING 1, chloroplastic... 0.01 OrthoFinder
Cpa|evm.model.tig00001339.10 tig00001339_g8266.t1 Protein SUPPRESSOR OF QUENCHING 1, chloroplastic... 0.01 OrthoFinder
EOD06844 No alias NHL repeat [Interproscan]. 0.02 OrthoFinder
XM_002507230.1 MICPUN_55383, 55383 Hypothetical protein 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0005509 calcium ion binding IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009654 photosystem II oxygen evolving complex IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
CC GO:0019898 extrinsic component of membrane IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
CC GO:1990204 oxidoreductase complex IEP Enrichment
InterPro domains Description Start Stop
IPR041492 HAD_2 85 276
IPR012336 Thioredoxin-like_fold 510 604
IPR001258 NHL_repeat 899 918
IPR001258 NHL_repeat 947 974
No external refs found!