lcl|LHPG02000019.1_cds_PRW32480.1_3950 (PRW32480)

Aliases : PRW32480

Description : Structural maintenance of chromosomes 1

Gene families : OG_01_0001598 (OrthoFinder) Phylogenetic Tree(s): OG0001598_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: lcl\|LHPG02000019.1_cds_PRW32480.1_3950
Cluster	HCCA: Cluster_35

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00020553.145	tig00020553_g10636.t1	Cell cycle.mitosis and meiosis.sister chromatid...	0.02	OrthoFinder
Cre15.g635800	30783526, SMC1	Structural maintenance of chromosomes protein 1...	0.03	OrthoFinder
Cz03g08200.t1	No alias	RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan].	0.02	OrthoFinder
Dusal.0197s00007.1	33188525	Hypothetical protein	0.02	OrthoFinder
Dusal.0360s00013.1	33194965	Hypothetical protein	0.02	OrthoFinder
OT_03G03810.1	No alias	RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan].	0.03	OrthoFinder
PTI_02G06300.1	No alias	RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan].	0.03	OrthoFinder
Sro767_g199480.1	Contig2377.g19536	Of chromosomes protein 1A	0.02	OrthoFinder
XM_002499807.1	MICPUN_56550, 56550	Condensin complex component	0.04	OrthoFinder
XM_003055252.1	MicpuC2_50904, 50904	Condensin complex component	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005694	chromosome	IEA	Interproscan
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0051276	chromosome organization	IEA	Interproscan
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	Enrichment
MF	GO:0003909	DNA ligase activity	IEP	Enrichment
MF	GO:0003910	DNA ligase (ATP) activity	IEP	Enrichment
MF	GO:0003916	DNA topoisomerase activity	IEP	Enrichment
MF	GO:0003917	DNA topoisomerase type I (single strand cut, ATP-independent) activity	IEP	Enrichment
MF	GO:0004061	arylformamidase activity	IEP	Enrichment
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Enrichment
BP	GO:0006265	DNA topological change	IEP	Enrichment
BP	GO:0006310	DNA recombination	IEP	Enrichment
BP	GO:0006534	cysteine metabolic process	IEP	Enrichment
BP	GO:0006568	tryptophan metabolic process	IEP	Enrichment
BP	GO:0006569	tryptophan catabolic process	IEP	Enrichment
BP	GO:0006576	cellular biogenic amine metabolic process	IEP	Enrichment
BP	GO:0006586	indolalkylamine metabolic process	IEP	Enrichment
BP	GO:0006606	protein import into nucleus	IEP	Enrichment
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Enrichment
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	Enrichment
BP	GO:0006913	nucleocytoplasmic transport	IEP	Enrichment
BP	GO:0007165	signal transduction	IEP	Enrichment
MF	GO:0008175	tRNA methyltransferase activity	IEP	Enrichment
MF	GO:0008176	tRNA (guanine-N7-)-methyltransferase activity	IEP	Enrichment
MF	GO:0008289	lipid binding	IEP	Enrichment
BP	GO:0009063	cellular amino acid catabolic process	IEP	Enrichment
BP	GO:0009069	serine family amino acid metabolic process	IEP	Enrichment
BP	GO:0009072	aromatic amino acid family metabolic process	IEP	Enrichment
BP	GO:0009074	aromatic amino acid family catabolic process	IEP	Enrichment
BP	GO:0009092	homoserine metabolic process	IEP	Enrichment
BP	GO:0009117	nucleotide metabolic process	IEP	Enrichment
BP	GO:0009165	nucleotide biosynthetic process	IEP	Enrichment
BP	GO:0009187	cyclic nucleotide metabolic process	IEP	Enrichment
BP	GO:0009190	cyclic nucleotide biosynthetic process	IEP	Enrichment
BP	GO:0009308	amine metabolic process	IEP	Enrichment
BP	GO:0009310	amine catabolic process	IEP	Enrichment
MF	GO:0015298	solute:cation antiporter activity	IEP	Enrichment
MF	GO:0015299	solute:proton antiporter activity	IEP	Enrichment
BP	GO:0016054	organic acid catabolic process	IEP	Enrichment
MF	GO:0016423	tRNA (guanine) methyltransferase activity	IEP	Enrichment
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	IEP	Enrichment
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	Enrichment
BP	GO:0017038	protein import	IEP	Enrichment
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Enrichment
BP	GO:0019346	transsulfuration	IEP	Enrichment
BP	GO:0019441	tryptophan catabolic process to kynurenine	IEP	Enrichment
MF	GO:0034061	DNA polymerase activity	IEP	Enrichment
BP	GO:0034504	protein localization to nucleus	IEP	Enrichment
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Enrichment
BP	GO:0035556	intracellular signal transduction	IEP	Enrichment
BP	GO:0042180	cellular ketone metabolic process	IEP	Enrichment
BP	GO:0042402	cellular biogenic amine catabolic process	IEP	Enrichment
BP	GO:0042430	indole-containing compound metabolic process	IEP	Enrichment
BP	GO:0042436	indole-containing compound catabolic process	IEP	Enrichment
BP	GO:0042537	benzene-containing compound metabolic process	IEP	Enrichment
BP	GO:0044106	cellular amine metabolic process	IEP	Enrichment
BP	GO:0044281	small molecule metabolic process	IEP	Enrichment
MF	GO:0044877	protein-containing complex binding	IEP	Enrichment
BP	GO:0046218	indolalkylamine catabolic process	IEP	Enrichment
BP	GO:0046395	carboxylic acid catabolic process	IEP	Enrichment
BP	GO:0046483	heterocycle metabolic process	IEP	Enrichment
BP	GO:0050667	homocysteine metabolic process	IEP	Enrichment
BP	GO:0051169	nuclear transport	IEP	Enrichment
BP	GO:0051170	import into nucleus	IEP	Enrichment
BP	GO:0070189	kynurenine metabolic process	IEP	Enrichment
BP	GO:0071103	DNA conformation change	IEP	Enrichment
BP	GO:0090407	organophosphate biosynthetic process	IEP	Enrichment
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Enrichment
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	Enrichment
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Enrichment
BP	GO:1901605	alpha-amino acid metabolic process	IEP	Enrichment
BP	GO:1901606	alpha-amino acid catabolic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR003395	RecF/RecN/SMC_N	9	1265
IPR010935	SMC_hinge	557	676

External Links

No external refs found!

lcl|LHPG02000019.1_cds_PRW32480.1_3950 (PRW32480)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation