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  5. lcl|LHPG02000018.1_cds_PRW32846.1_3749

lcl|LHPG02000018.1_cds_PRW32846.1_3749 (PRW32846)


Aliases : PRW32846

Description : 60S ribosomal L19-2 isoform A


Gene families : OG_01_0002658 (OrthoFinder) Phylogenetic Tree(s): OG0002658_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000018.1_cds_PRW32846.1_3749
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021181.1 tig00021181_g19305.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.19 OrthoFinder
Cre02.g075700 30785746, RPL19 Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder
Cz11g15180.t1 No alias Ribosomal protein L19/L19e [Interproscan]. 0.1 OrthoFinder
Dusal.0530s00005.1 33203474 Ribosomal protein L19/L19e [Interproscan]. 0.1 OrthoFinder
OT_02G02430.1 No alias Ribosomal protein L19/L19e [Interproscan]. 0.16 OrthoFinder
PTI_21G02720.1 No alias Ribosomal protein L19/L19e; Chlorophyll A-B binding... 0.24 OrthoFinder
Sro734_g194640.1 Contig3769.g28942 60S ribosomal protein L19 0.22 OrthoFinder
TP02G08540.1 No alias Ribosomal protein L19/L19e [Interproscan]. 0.11 OrthoFinder
Vocar.0001s1683.1 32884888 Ribosomal protein L19/L19e [Interproscan]. 0.04 OrthoFinder
XM_002507605.1 MICPUN_112659, 112659 60S ribosomal protein L19 (RPL19) 0.18 OrthoFinder
XM_003055988.1 MicpuC2_49436, 49436 60S ribosomal protein L19 protein (RPL19) 0.04 OrthoFinder
lcl|VRMN01000017.1_cds_KAA8490961.1_6164 KAA8490961 60S ribosomal protein L19-2 0.11 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
MF GO:0016872 intramolecular lyase activity IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000196 Ribosomal_L19/L19e 4 146
IPR016087 Chalcone_isomerase 618 790
IPR001623 DnaJ_domain 243 305
No external refs found!