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  5. lcl|LHPG02000017.1_cds_PRW33322.1_3528

lcl|LHPG02000017.1_cds_PRW33322.1_3528 (PRW33322)


Aliases : PRW33322

Description : 50S ribosomal L11


Gene families : OG_01_0001071 (OrthoFinder) Phylogenetic Tree(s): OG0001071_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000017.1_cds_PRW33322.1_3528
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000361.54 tig00000361_g24402.t1 Protein biosynthesis.organelle translation... 0.03 OrthoFinder
Cre10.g423650 30790265, PRPL11 Protein biosynthesis.organelle translation... 0.19 OrthoFinder
Cz11g03060.t1 No alias Ribosomal protein L11, C-terminal; Ribosomal protein... 0.11 OrthoFinder
EOD25013 No alias Ribosomal protein L11, C-terminal; Ribosomal protein... 0.04 OrthoFinder
EOD40511 No alias 50S ribosomal protein L11 [Ensembl]. 0.04 OrthoFinder
OT_14G01140.1 No alias Ribosomal protein L11, N-terminal; Ribosomal protein... 0.13 OrthoFinder
Sro51_chlor_g030320.1 Rpl11 Rpl11 0.05 OrthoFinder
TPCG00670.1 No alias Ribosomal protein L11, C-terminal; Ribosomal protein... 0.05 OrthoFinder
Vocar.0030s0022.1 32894461 Ribosomal protein L11, C-terminal; Ribosomal protein... 0.04 OrthoFinder
XM_002505743.1 MICPUN_92304, 92304 Ribosomal protein L11, N-terminal; Ribosomal protein... 0.12 OrthoFinder
XM_003057347.1 MicpuC2_70704, 70704 Mitochondrial ribosomal protein L11 (RPL11M) 0.02 OrthoFinder
XM_003063782.1 MicpuC2_29915, 29915 Ribosomal protein L11, N-terminal; Ribosomal protein... 0.05 OrthoFinder
lcl|BLLF01005196.1_cds_GFH30861.1_25338 HaLaN_29790, GFH30861 50S ribosomal protein L11 0.07 OrthoFinder
lcl|BLLF01005196.1_cds_GFH30862.1_25339 HaLaN_29791, GFH30862 50S ribosomal protein L11 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003747 translation release factor activity IEP Enrichment
MF GO:0004332 fructose-bisphosphate aldolase activity IEP Enrichment
MF GO:0004556 alpha-amylase activity IEP Enrichment
MF GO:0004751 ribose-5-phosphate isomerase activity IEP Enrichment
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
BP GO:0006091 generation of precursor metabolites and energy IEP Enrichment
BP GO:0006415 translational termination IEP Enrichment
MF GO:0008079 translation termination factor activity IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
MF GO:0016830 carbon-carbon lyase activity IEP Enrichment
MF GO:0016832 aldehyde-lyase activity IEP Enrichment
MF GO:0016851 magnesium chelatase activity IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
BP GO:0022411 cellular component disassembly IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0032977 membrane insertase activity IEP Enrichment
BP GO:0032984 protein-containing complex disassembly IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0043624 cellular protein complex disassembly IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
MF GO:0050660 flavin adenine dinucleotide binding IEP Enrichment
MF GO:0051002 ligase activity, forming nitrogen-metal bonds IEP Enrichment
MF GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes IEP Enrichment
MF GO:0070402 NADPH binding IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0140104 molecular carrier activity IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR020784 Ribosomal_L11_N 2 59
IPR020783 Ribosomal_L11_C 64 131
IPR010865 DUF1499 198 325
No external refs found!