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  5. lcl|LHPG02000017.1_cds_PRW33309.1_3617

lcl|LHPG02000017.1_cds_PRW33309.1_3617 (PRW33309)


Aliases : PRW33309

Description : 60S ribosomal L4 isoform B


Gene families : OG_01_0002264 (OrthoFinder) Phylogenetic Tree(s): OG0002264_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000017.1_cds_PRW33309.1_3617
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00022075.53 tig00022075_g23614.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder
Cre09.g397697 30781440, RPL4 Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 OrthoFinder
Cz16g02120.t1 No alias Ribosomal protein L4/L1e; 60S ribosomal protein L4,... 0.05 OrthoFinder
EOD06962 No alias 60S ribosomal protein L4, C-terminal domain; Ribosomal... 0.03 OrthoFinder
PTI_00G01550.1 No alias 60S ribosomal protein L4, C-terminal domain; Ribosomal... 0.03 OrthoFinder
PTI_12G00050.1 No alias 60S ribosomal protein L4, C-terminal domain; Ribosomal... 0.03 OrthoFinder
Sro621_g176640.1 Contig1511.g13781 60S ribosomal protein L4 0.04 OrthoFinder
TP05G01880.1 No alias Ribosomal protein L4/L1e; 60S ribosomal protein L4,... 0.05 OrthoFinder
Vocar.0009s0214.1 32893255 60S ribosomal protein L4, C-terminal domain; Ribosomal... 0.05 OrthoFinder
XM_002506518.1 MICPUN_96004, 96004 Ribosomal protein L4/L1e; 60S ribosomal protein L4,... 0.02 OrthoFinder
XM_003063189.1 MicpuC2_45929, 45929 60S ribosomal protein L4, C-terminal domain; Ribosomal... 0.02 OrthoFinder
lcl|BLLF01002159.1_cds_GFH22946.1_17423 HaLaN_20485, GFH22946 Component of cytosolic 80S ribosome and 60S large subunit 0.05 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8495171.1_3701 KAA8495171 60S ribosomal protein L4-A 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004556 alpha-amylase activity IEP Enrichment
MF GO:0004806 triglyceride lipase activity IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
MF GO:0016160 amylase activity IEP Enrichment
MF GO:0016298 lipase activity IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
MF GO:0052689 carboxylic ester hydrolase activity IEP Enrichment
InterPro domains Description Start Stop
IPR025755 Ribos_L4_C_dom 274 347
IPR002136 Ribosomal_L4/L1e 22 261
No external refs found!