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  5. lcl|LHPG02000017.1_cds_PRW33245.1_3628

lcl|LHPG02000017.1_cds_PRW33245.1_3628 (PRW33245)


Aliases : PRW33245

Description : UPF0187 chloroplastic


Gene families : OG_01_0000064 (OrthoFinder) Phylogenetic Tree(s): OG0000064_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000017.1_cds_PRW33245.1_3628
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000215.17 tig00000215_g18546.t1 Solute transport.channels.VCCN chloride anion channel 0.02 OrthoFinder
Cre16.g663400 30777714 Solute transport.channels.VCCN chloride anion channel 0.02 OrthoFinder
Cre16.g663450 30778050 Solute transport.channels.VCCN chloride anion channel 0.03 OrthoFinder
EOD09129 No alias Bestrophin/UPF0187 [Interproscan]. 0.01 OrthoFinder
PTI_10G00030.1 No alias Bestrophin/UPF0187 [Interproscan]. 0.02 OrthoFinder
Sro145_g067260.1 Contig3646.g28172 UPF0187 protein 0.02 OrthoFinder
Sro152_g069350.1 Contig69.g695 UPF0187 protein 0.01 OrthoFinder
Sro659_g182830.1 Contig2136.g17991 UPF0187 protein 0.02 OrthoFinder
TP08G03260.1 No alias Bestrophin/UPF0187 [Interproscan]. 0.02 OrthoFinder
Transcript_contig_67519 67519 Bestrophin/UPF0187 [Interproscan]. 0.01 OrthoFinder
Transcript_contig_78078 78078 Bestrophin/UPF0187 [Interproscan]. 0.02 OrthoFinder
Transcript_contig_79780 79780 Hypothetical protein 0.01 OrthoFinder
Vocar.0027s0112.1 32887109 Bestrophin/UPF0187 [Interproscan]. 0.02 OrthoFinder
Vocar.0041s0049.1 32888730 Bestrophin/UPF0187 [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000016.1_cds_PRW33726.1_3376 PRW33726 UPF0187 chloroplastic 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0001401 SAM complex IEP Enrichment
MF GO:0004089 carbonate dehydratase activity IEP Enrichment
MF GO:0004367 glycerol-3-phosphate dehydrogenase [NAD+] activity IEP Enrichment
CC GO:0005742 mitochondrial outer membrane translocase complex IEP Enrichment
BP GO:0006072 glycerol-3-phosphate metabolic process IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0016730 oxidoreductase activity, acting on iron-sulfur proteins as donors IEP Enrichment
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP Enrichment
MF GO:0030246 carbohydrate binding IEP Enrichment
MF GO:0030247 polysaccharide binding IEP Enrichment
BP GO:0046168 glycerol-3-phosphate catabolic process IEP Enrichment
MF GO:0047952 glycerol-3-phosphate dehydrogenase [NAD(P)+] activity IEP Enrichment
MF GO:0051287 NAD binding IEP Enrichment
BP GO:0052646 alditol phosphate metabolic process IEP Enrichment
CC GO:0098799 outer mitochondrial membrane protein complex IEP Enrichment
MF GO:2001070 starch binding IEP Enrichment
InterPro domains Description Start Stop
IPR021134 Bestrophin/UPF0187 96 392
No external refs found!