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  5. lcl|LHPG02000017.1_cds_PRW33099.1_3518

lcl|LHPG02000017.1_cds_PRW33099.1_3518 (PRW33099)


Aliases : PRW33099

Description : SNF2 family DNA-dependent ATPase


Gene families : OG_01_0000017 (OrthoFinder) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: lcl|LHPG02000017.1_cds_PRW33099.1_3518
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000802.67 tig00000802_g4315.t2 Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre03.g162701 30788203 Chromatin structure-remodeling complex protein SYD... 0.03 OrthoFinder
EOD26260 No alias SNF2-related, N-terminal domain; ISWI, HAND domain;... 0.02 OrthoFinder
EOD41894 No alias SNF2-related, N-terminal domain [Interproscan]. 0.02 OrthoFinder
Sro29_g019150.1 Contig1384.g12758 CHD3-type chromatin-remodeling factor CHR7 0.02 OrthoFinder
Sro463_g148220.1 Contig3968.g30431 Probable chromatin-remodeling complex ATPase chain 0.02 OrthoFinder
Transcript_contig_67500 67500 Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder
XM_002499538.1 MICPUN_56143, 56143 SNF2 super family 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0009187 cyclic nucleotide metabolic process IEP Enrichment
BP GO:0009190 cyclic nucleotide biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 1328 1402
IPR023780 Chromo_domain 797 848
IPR019787 Znf_PHD-finger 621 666
IPR000330 SNF2_N 902 1202
IPR032001 SAWADEE_dom 1 97
No external refs found!