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  5. lcl|LHPG02000016.1_cds_PRW33726.1_3376

lcl|LHPG02000016.1_cds_PRW33726.1_3376 (PRW33726)


Aliases : PRW33726

Description : UPF0187 chloroplastic


Gene families : OG_01_0000064 (OrthoFinder) Phylogenetic Tree(s): OG0000064_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000016.1_cds_PRW33726.1_3376
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
Cre16.g662600 30777389 Solute transport.channels.VCCN chloride anion channel 0.07 OrthoFinder
Cre16.g663400 30777714 Solute transport.channels.VCCN chloride anion channel 0.09 OrthoFinder
Cre16.g663450 30778050 Solute transport.channels.VCCN chloride anion channel 0.07 OrthoFinder
Dusal.0033s00032.1 33202500 Bestrophin/UPF0187 [Interproscan]. 0.08 OrthoFinder
EOD05573 No alias Bestrophin/UPF0187 [Interproscan]. 0.01 OrthoFinder
EOD30282 No alias Bestrophin/UPF0187 [Interproscan]. 0.03 OrthoFinder
EOD38010 No alias Bestrophin/UPF0187 [Interproscan]. 0.01 OrthoFinder
PTI_05G03790.1 No alias Bestrophin/UPF0187 [Interproscan]. 0.02 OrthoFinder
PTI_10G00030.1 No alias Bestrophin/UPF0187 [Interproscan]. 0.02 OrthoFinder
Sro145_g067260.1 Contig3646.g28172 UPF0187 protein 0.04 OrthoFinder
Sro152_g069350.1 Contig69.g695 UPF0187 protein 0.03 OrthoFinder
Sro1890_g303730.1 Contig981.g9967 UPF0187 protein 0.05 OrthoFinder
Sro659_g182830.1 Contig2136.g17991 UPF0187 protein 0.04 OrthoFinder
TP04G07790.1 No alias Bestrophin/UPF0187 [Interproscan]. 0.01 OrthoFinder
TP04G07800.1 No alias Bestrophin/UPF0187 [Interproscan]. 0.03 OrthoFinder
Transcript_contig_78434 78434 Bestrophin/UPF0187 [Interproscan]. 0.07 OrthoFinder
Transcript_contig_79780 79780 Hypothetical protein 0.1 OrthoFinder
Vocar.0002s0473.1 32890741 Bestrophin/UPF0187 [Interproscan]. 0.02 OrthoFinder
Vocar.0027s0112.1 32887109 Bestrophin/UPF0187 [Interproscan]. 0.02 OrthoFinder
Vocar.0039s0076.1 32897751 Bestrophin/UPF0187 [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01000981.1_cds_GFH16334.1_10811 HaLaN_12731, GFH16334 Bestrophin/UPF0187 [Interproscan]. 0.03 OrthoFinder
lcl|BLLF01006581.1_cds_GFH32381.1_26858 HaLaN_31591, GFH32381 Hypothetical protein 0.01 OrthoFinder
lcl|LHPG02000017.1_cds_PRW33245.1_3628 PRW33245 UPF0187 chloroplastic 0.02 OrthoFinder
lcl|LHPG02000019.1_cds_PRW32665.1_4091 PRW32665 UPF0187 chloroplastic 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEP Enrichment
MF GO:0030246 carbohydrate binding IEP Enrichment
MF GO:0030247 polysaccharide binding IEP Enrichment
MF GO:2001070 starch binding IEP Enrichment
InterPro domains Description Start Stop
IPR021134 Bestrophin/UPF0187 100 392
No external refs found!