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  5. lcl|LHPG02000016.1_cds_PRW33702.1_3194

lcl|LHPG02000016.1_cds_PRW33702.1_3194 (PRW33702)


Aliases : PRW33702

Description : Kinetochore NDC80


Gene families : OG_01_0003290 (OrthoFinder) Phylogenetic Tree(s): OG0003290_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000016.1_cds_PRW33702.1_3194
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021621.13 tig00021621_g22968.t1 Cell cycle.mitosis and meiosis.chromosome... 0.08 OrthoFinder
Cre02.g098300 30784884 Cell cycle.mitosis and meiosis.chromosome... 0.07 OrthoFinder
Cz06g36290.t1 No alias Kinetochore protein Ndc80 [Interproscan]. 0.07 OrthoFinder
Cz13g11220.t1 No alias Kinetochore protein Ndc80 [Interproscan]. 0.08 OrthoFinder
Dusal.0192s00006.1 33198688 Kinetochore protein Ndc80 [Interproscan]. 0.04 OrthoFinder
PTI_02G05350.1 No alias Kinetochore protein Ndc80 [Interproscan]. 0.07 OrthoFinder
Sro675_g185480.1 Contig1040.g10286 Kinetochore protein NDC80 homolog 0.07 OrthoFinder
TP03G09850.1 No alias Kinetochore protein Ndc80 [Interproscan]. 0.06 OrthoFinder
Transcript_contig_55846 55846 Kinetochore protein Ndc80 [Interproscan]. 0.08 OrthoFinder
Vocar.0036s0086.1 32892260 Kinetochore protein Ndc80 [Interproscan]. 0.02 OrthoFinder
XM_002507589.1 MICPUN_107342, 107342 Hypothetical protein (HEC1) 0.04 OrthoFinder
lcl|BLLF01003700.1_cds_GFH27987.1_22464 HaLaN_26394, GFH27987 Hypothetical protein 0.05 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494404.1_2934 KAA8494404 Kinetochore protein NDC80-like 0.08 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0000775 chromosome, centromeric region IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
CC GO:0031262 Ndc80 complex IEA Interproscan
BP GO:0045132 meiotic chromosome segregation IEA Interproscan
BP GO:0051315 attachment of mitotic spindle microtubules to kinetochore IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
CC GO:0000444 MIS12/MIND type complex IEP Enrichment
CC GO:0000776 kinetochore IEP Enrichment
CC GO:0000796 condensin complex IEP Enrichment
CC GO:0000818 nuclear MIS12/MIND complex IEP Enrichment
BP GO:0002376 immune system process IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0004100 chitin synthase activity IEP Enrichment
MF GO:0004190 aspartic-type endopeptidase activity IEP Enrichment
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0005975 carbohydrate metabolic process IEP Enrichment
BP GO:0006022 aminoglycan metabolic process IEP Enrichment
BP GO:0006023 aminoglycan biosynthetic process IEP Enrichment
BP GO:0006030 chitin metabolic process IEP Enrichment
BP GO:0006031 chitin biosynthetic process IEP Enrichment
BP GO:0006040 amino sugar metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006323 DNA packaging IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0006955 immune response IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
BP GO:0007062 sister chromatid cohesion IEP Enrichment
BP GO:0007064 mitotic sister chromatid cohesion IEP Enrichment
BP GO:0007076 mitotic chromosome condensation IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008080 N-acetyltransferase activity IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
MF GO:0008942 nitrite reductase [NAD(P)H] activity IEP Enrichment
BP GO:0009262 deoxyribonucleotide metabolic process IEP Enrichment
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP Enrichment
BP GO:0009605 response to external stimulus IEP Enrichment
BP GO:0009607 response to biotic stimulus IEP Enrichment
BP GO:0009617 response to bacterium IEP Enrichment
BP GO:0009620 response to fungus IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016407 acetyltransferase activity IEP Enrichment
MF GO:0016410 N-acyltransferase activity IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors IEP Enrichment
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
BP GO:0030261 chromosome condensation IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0031390 Ctf18 RFC-like complex IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042742 defense response to bacterium IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043207 response to external biotic stimulus IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0044419 biological process involved in interspecies interaction between organisms IEP Enrichment
CC GO:0044815 DNA packaging complex IEP Enrichment
BP GO:0046349 amino sugar biosynthetic process IEP Enrichment
MF GO:0046857 oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor IEP Enrichment
BP GO:0050832 defense response to fungus IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
MF GO:0051287 NAD binding IEP Enrichment
BP GO:0051707 response to other organism IEP Enrichment
MF GO:0070001 aspartic-type peptidase activity IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:0098542 defense response to other organism IEP Enrichment
MF GO:0098809 nitrite reductase activity IEP Enrichment
CC GO:0099080 supramolecular complex IEP Enrichment
BP GO:1901071 glucosamine-containing compound metabolic process IEP Enrichment
BP GO:1901073 glucosamine-containing compound biosynthetic process IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR005550 Kinetochore_Ndc80 50 186
IPR011515 Shugoshin_C 871 894
No external refs found!