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  5. lcl|LHPG02000016.1_cds_PRW33640.1_3236

lcl|LHPG02000016.1_cds_PRW33640.1_3236 (PRW33640)


Aliases : PRW33640

Description : 54S ribosomal mitochondrial


Gene families : OG_01_0003020 (OrthoFinder) Phylogenetic Tree(s): OG0003020_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000016.1_cds_PRW33640.1_3236
Cluster HCCA: Cluster_81

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000215.63 tig00000215_g18601.t1 No description available 0.02 OrthoFinder
OT_01G05570.1 No alias Hypothetical protein 0.02 OrthoFinder
PTI_08G02630.1 No alias Ribosomal protein/NADH dehydrogenase domain [Interproscan]. 0.02 OrthoFinder
Sro1389_g268530.1 Contig3774.g28973 39S ribosomal protein L43, mitochondrial 0.04 OrthoFinder
Vocar.0002s0187.1 32890671 Ribosomal protein/NADH dehydrogenase domain [Interproscan]. 0.02 OrthoFinder
XM_002500982.1 MICPUN_80305, 80305 Ribosomal protein/NADH dehydrogenase domain [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP Enrichment
MF GO:0002161 aminoacyl-tRNA editing activity IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006720 isoprenoid metabolic process IEP Enrichment
BP GO:0008299 isoprenoid biosynthetic process IEP Enrichment
BP GO:0009116 nucleoside metabolic process IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
CC GO:0016272 prefoldin complex IEP Enrichment
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0051213 dioxygenase activity IEP Enrichment
MF GO:0052689 carboxylic ester hydrolase activity IEP Enrichment
MF GO:0120227 acyl-CoA binding IEP Enrichment
MF GO:1901567 fatty acid derivative binding IEP Enrichment
BP GO:1901657 glycosyl compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR007741 Ribosome/NADH_DH 26 74
No external refs found!