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  5. lcl|LHPG02000016.1_cds_PRW33563.1_3375

lcl|LHPG02000016.1_cds_PRW33563.1_3375 (PRW33563)


Aliases : PRW33563

Description : Low-CO2 inducible


Gene families : OG_01_0000299 (OrthoFinder) Phylogenetic Tree(s): OG0000299_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000016.1_cds_PRW33563.1_3375
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000851.2 tig00000851_g4886.t1 No description available 0.01 OrthoFinder
Cre04.g222800 30791567, LCID No description available 0.03 OrthoFinder
Cre04.g223250 30791159, LCIE No description available 0.02 OrthoFinder
Cre06.g307500 30779446, LCIC No description available 0.09 OrthoFinder
Cre10.g452800 30790505, LCIB No description available 0.08 OrthoFinder
Dusal.0033s00020.1 33202516 Limiting CO2-inducible protein B/C, beta carbonyic... 0.02 OrthoFinder
Dusal.0153s00007.1 33203322 Limiting CO2-inducible protein B/C, beta carbonyic... 0.05 OrthoFinder
Dusal.0190s00023.1 33189436 Limiting CO2-inducible protein B/C, beta carbonyic... 0.04 OrthoFinder
PTI_01G11240.1 No alias Limiting CO2-inducible protein B/C, beta carbonyic... 0.01 OrthoFinder
Sro243_g096950.1 Contig3073.g24519 Inherit from NOG: Low-co2 inducible protein 0.02 OrthoFinder
Sro520_g159080.1 Contig2679.g21664 Low-co2 inducible protein 0.02 OrthoFinder
Vocar.0030s0054.1 32894574 Limiting CO2-inducible protein B/C, beta carbonyic... 0.02 OrthoFinder
lcl|BLLF01001548.1_cds_GFH19961.1_14438 HaLaN_17001, GFH19961 LCIB_C_CA domain-containing protein 0.03 OrthoFinder
lcl|BLLF01004964.1_cds_GFH30529.1_25006 HaLaN_29401, GFH30529 Low-CO2 inducible 0.03 OrthoFinder
lcl|LHPG02000016.1_cds_PRW33706.1_3342 PRW33706 Low-CO2 inducible 0.02 OrthoFinder
lcl|LHPG02000017.1_cds_PRW33318.1_3464 PRW33318 Low-CO2 inducible 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0004842 ubiquitin-protein transferase activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0016567 protein ubiquitination IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0019787 ubiquitin-like protein transferase activity IEP Enrichment
MF GO:0030170 pyridoxal phosphate binding IEP Enrichment
BP GO:0032446 protein modification by small protein conjugation IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
MF GO:0070279 vitamin B6 binding IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR040703 LCIB/C_CA 145 382
No external refs found!