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  5. lcl|LHPG02000016.1_cds_PRW33521.1_3229

lcl|LHPG02000016.1_cds_PRW33521.1_3229 (PRW33521)


Aliases : PRW33521

Description : 39S ribosomal mitochondrial


Gene families : OG_01_0003518 (OrthoFinder) Phylogenetic Tree(s): OG0003518_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000016.1_cds_PRW33521.1_3229
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
Cre13.g588310 30784218 Protein biosynthesis.organelle translation... 0.03 OrthoFinder
OT_05G00450.1 No alias Ribosomal protein L47, mitochondrial [Interproscan]. 0.03 OrthoFinder
Sro226_g092030.1 Contig565.g7175 39S ribosomal protein L47, mitochondrial 0.01 OrthoFinder
XM_003058135.1 MicpuC2_39399, 39399 Ribosomal protein L47, mitochondrial [Interproscan]. 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005761 mitochondrial ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004592 pantoate-beta-alanine ligase activity IEP Enrichment
CC GO:0005739 mitochondrion IEP Enrichment
BP GO:0006450 regulation of translational fidelity IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
BP GO:0006575 cellular modified amino acid metabolic process IEP Enrichment
BP GO:0006766 vitamin metabolic process IEP Enrichment
BP GO:0006767 water-soluble vitamin metabolic process IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
BP GO:0009110 vitamin biosynthetic process IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
BP GO:0015939 pantothenate metabolic process IEP Enrichment
BP GO:0015940 pantothenate biosynthetic process IEP Enrichment
CC GO:0016272 prefoldin complex IEP Enrichment
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Enrichment
MF GO:0016881 acid-amino acid ligase activity IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Enrichment
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Enrichment
BP GO:0043461 proton-transporting ATP synthase complex assembly IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0051082 unfolded protein binding IEP Enrichment
BP GO:0065008 regulation of biological quality IEP Enrichment
BP GO:0070071 proton-transporting two-sector ATPase complex assembly IEP Enrichment
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR010729 Ribosomal_L47_mit 41 116
No external refs found!