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  5. lcl|LHPG02000014.1_cds_PRW39385.1_2562

lcl|LHPG02000014.1_cds_PRW39385.1_2562 (PRW39385)


Aliases : PRW39385

Description : 40S ribosomal S3a-2 isoform A


Gene families : OG_01_0002820 (OrthoFinder) Phylogenetic Tree(s): OG0002820_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000014.1_cds_PRW39385.1_2562
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020710.39 tig00020710_g13273.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.18 OrthoFinder
Cre13.g568650 30784327, RPS3a Protein biosynthesis.cytosolic ribosome.small subunit... 0.13 OrthoFinder
Cz10g21050.t1 No alias Ribosomal protein S3Ae [Interproscan]. 0.19 OrthoFinder
Dusal.0093s00008.1 33185336 Ribosomal protein S3Ae [Interproscan]. 0.14 OrthoFinder
EOD08172 No alias Ribosomal protein S3Ae [Interproscan]. 0.17 OrthoFinder
EOD18963 No alias Ribosomal protein S3Ae [Interproscan]. 0.17 OrthoFinder
OT_20G00130.1 No alias Ribosomal protein S3Ae [Interproscan]. 0.21 OrthoFinder
PTI_01G05430.1 No alias Ribosomal protein S3Ae [Interproscan]. 0.21 OrthoFinder
Sro174_g076500.1 Contig4298.g32434 40S ribosomal protein S1 0.21 OrthoFinder
Sro920_g220290.1 Contig2508.g20529 40S ribosomal protein S1 0.18 OrthoFinder
SymbC1.scaffold7952.3 7952.3 Ribosomal protein S3Ae [Interproscan]. 0.05 OrthoFinder
TP20G01320.1 No alias Ribosomal protein S3Ae [Interproscan]. 0.23 OrthoFinder
Vocar.0001s0280.1 32885113 Ribosomal protein S3Ae [Interproscan]. 0.06 OrthoFinder
XM_002505213.1 MICPUN_95475, 95475 Ribosomal protein S3Ae [Interproscan]. 0.17 OrthoFinder
XM_003060312.1 MicpuC2_49648, 49648 Ribosomal protein S3Ae [Interproscan]. 0.1 OrthoFinder
lcl|LHPG02000014.1_cds_PRW39386.1_2561 PRW39386 40S ribosomal S3a-2 isoform B 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498213.1_7166 KAA8498213 40S ribosomal protein S3a 0.16 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004367 glycerol-3-phosphate dehydrogenase [NAD+] activity IEP Enrichment
MF GO:0004751 ribose-5-phosphate isomerase activity IEP Enrichment
MF GO:0005047 signal recognition particle binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005785 signal recognition particle receptor complex IEP Enrichment
BP GO:0006072 glycerol-3-phosphate metabolic process IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
BP GO:0046168 glycerol-3-phosphate catabolic process IEP Enrichment
MF GO:0047952 glycerol-3-phosphate dehydrogenase [NAD(P)+] activity IEP Enrichment
BP GO:0052646 alditol phosphate metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:1901136 carbohydrate derivative catabolic process IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR001593 Ribosomal_S3Ae 15 221
No external refs found!