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  5. lcl|LHPG02000014.1_cds_PRW39289.1_2784

lcl|LHPG02000014.1_cds_PRW39289.1_2784 (PRW39289)


Aliases : PRW39289

Description : Soluble starch synthase chloroplastic amyloplastic isoform B


Gene families : OG_01_0000642 (OrthoFinder) Phylogenetic Tree(s): OG0000642_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000014.1_cds_PRW39289.1_2784
Cluster HCCA: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020746.8 tig00020746_g13662.t1 Probable starch synthase 4, chloroplastic/amyloplastic... 0.02 OrthoFinder
XM_003064330.1 MicpuC2_46038, 46038 Glycosyltransferase family 5 protein (SSIV) 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:2001070 starch binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003910 DNA ligase (ATP) activity IEP Enrichment
MF GO:0004112 cyclic-nucleotide phosphodiesterase activity IEP Enrichment
MF GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
MF GO:0008081 phosphoric diester hydrolase activity IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP Enrichment
BP GO:0051259 protein complex oligomerization IEP Enrichment
BP GO:0051260 protein homooligomerization IEP Enrichment
InterPro domains Description Start Stop
IPR013534 Starch_synth_cat_dom 921 1104
IPR005085 CBM25 823 910
IPR005085 CBM25 442 526
IPR005085 CBM25 661 750
IPR001296 Glyco_trans_1 1162 1287
No external refs found!