lcl|LHPG02000014.1_cds_PRW39279.1_2485 (PRW39279)

Aliases : PRW39279

Description : Dynamin-related GTPase isoform B

Gene families : OG_01_0001020 (OrthoFinder) Phylogenetic Tree(s): OG0001020_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: lcl\|LHPG02000014.1_cds_PRW39279.1_2485
Cluster	HCCA: Cluster_9

Target	Alias	Description	ECC score	Gene Family Method	Actions
Sro814_g206290.1	Contig2480.g20286	Dynamin-like protein ARC5	0.01	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003909	DNA ligase activity	None	Extended
MF	GO:0003910	DNA ligase (ATP) activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	IEA	Interproscan
BP	GO:0006310	DNA recombination	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0002376	immune system process	IEP	Enrichment
MF	GO:0004470	malic enzyme activity	IEP	Enrichment
MF	GO:0004471	malate dehydrogenase (decarboxylating) (NAD+) activity	IEP	Enrichment
MF	GO:0004650	polygalacturonase activity	IEP	Enrichment
MF	GO:0004864	protein phosphatase inhibitor activity	IEP	Enrichment
CC	GO:0005681	spliceosomal complex	IEP	Enrichment
BP	GO:0006334	nucleosome assembly	IEP	Enrichment
BP	GO:0006405	RNA export from nucleus	IEP	Enrichment
BP	GO:0006406	mRNA export from nucleus	IEP	Enrichment
BP	GO:0006955	immune response	IEP	Enrichment
MF	GO:0008484	sulfuric ester hydrolase activity	IEP	Enrichment
BP	GO:0009605	response to external stimulus	IEP	Enrichment
BP	GO:0009607	response to biotic stimulus	IEP	Enrichment
BP	GO:0009617	response to bacterium	IEP	Enrichment
BP	GO:0009620	response to fungus	IEP	Enrichment
MF	GO:0009916	alternative oxidase activity	IEP	Enrichment
BP	GO:0010921	regulation of phosphatase activity	IEP	Enrichment
MF	GO:0016491	oxidoreductase activity	IEP	Enrichment
MF	GO:0016615	malate dehydrogenase activity	IEP	Enrichment
MF	GO:0016679	oxidoreductase activity, acting on diphenols and related substances as donors	IEP	Enrichment
MF	GO:0016682	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor	IEP	Enrichment
BP	GO:0016973	poly(A)+ mRNA export from nucleus	IEP	Enrichment
MF	GO:0019208	phosphatase regulator activity	IEP	Enrichment
MF	GO:0019212	phosphatase inhibitor activity	IEP	Enrichment
MF	GO:0019825	oxygen binding	IEP	Enrichment
MF	GO:0019888	protein phosphatase regulator activity	IEP	Enrichment
BP	GO:0030001	metal ion transport	IEP	Enrichment
MF	GO:0030170	pyridoxal phosphate binding	IEP	Enrichment
BP	GO:0035303	regulation of dephosphorylation	IEP	Enrichment
BP	GO:0035304	regulation of protein dephosphorylation	IEP	Enrichment
BP	GO:0042742	defense response to bacterium	IEP	Enrichment
BP	GO:0043207	response to external biotic stimulus	IEP	Enrichment
BP	GO:0043666	regulation of phosphoprotein phosphatase activity	IEP	Enrichment
BP	GO:0044419	biological process involved in interspecies interaction between organisms	IEP	Enrichment
BP	GO:0050657	nucleic acid transport	IEP	Enrichment
BP	GO:0050658	RNA transport	IEP	Enrichment
BP	GO:0050832	defense response to fungus	IEP	Enrichment
BP	GO:0051028	mRNA transport	IEP	Enrichment
BP	GO:0051168	nuclear export	IEP	Enrichment
BP	GO:0051236	establishment of RNA localization	IEP	Enrichment
BP	GO:0051336	regulation of hydrolase activity	IEP	Enrichment
BP	GO:0051707	response to other organism	IEP	Enrichment
BP	GO:0055114	obsolete oxidation-reduction process	IEP	Enrichment
BP	GO:0065004	protein-DNA complex assembly	IEP	Enrichment
MF	GO:0070279	vitamin B6 binding	IEP	Enrichment
BP	GO:0098542	defense response to other organism	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR021420	DUF3067	3	48
IPR012308	DNA_ligase_ATP-dep_N	841	1054
IPR001841	Znf_RING	2727	2767
IPR000253	FHA_dom	2289	2347
IPR012310	DNA_ligase_ATP-dep_cent	1095	1362
IPR012309	DNA_ligase_ATP-dep_C	1385	1496
IPR022812	Dynamin	82	261

External Links

No external refs found!

lcl|LHPG02000014.1_cds_PRW39279.1_2485 (PRW39279)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation