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  5. Cpa|evm.model.tig00000553.49

Cpa|evm.model.tig00000553.49 (tig00000553_g2124.t1)


Aliases : tig00000553_g2124.t1

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.NOC4 assembly factor


Gene families : OG_01_0003277 (OrthoFinder) Phylogenetic Tree(s): OG0003277_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000553.49
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
Cre01.g068377 30788462 Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 OrthoFinder
EOD28173 No alias CCAAT-binding factor [Interproscan]. 0.03 OrthoFinder
PTI_08G02720.1 No alias CCAAT-binding factor [Interproscan]. 0.06 OrthoFinder
Sro631_g178450.1 Contig3194.g25250 Nucleolar complex protein 4 homolog 0.04 OrthoFinder
TP04G00470.1 No alias CCAAT-binding factor [Interproscan]. 0.04 OrthoFinder
XM_003063389.1 MicpuC2_53064, 53064 CCAAT-binding factor [Interproscan]. 0.03 OrthoFinder
lcl|BLLF01000360.1_cds_GFH10939.1_5416 HaLaN_06345, GFH10939 CBF domain-containing protein 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000959 mitochondrial RNA metabolic process IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004559 alpha-mannosidase activity IEP Enrichment
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Enrichment
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005739 mitochondrion IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008745 N-acetylmuramoyl-L-alanine amidase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
MF GO:0015923 mannosidase activity IEP Enrichment
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Enrichment
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
MF GO:0061783 peptidoglycan muralytic activity IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR005612 CCAAT-binding_factor 519 561
IPR005612 CCAAT-binding_factor 360 437
No external refs found!