1. Home
  2. Species
  3. Chlorella sorokiniana
  4. Sequence
  5. lcl|LHPG02000014.1_cds_PRW39172.1_2482

lcl|LHPG02000014.1_cds_PRW39172.1_2482 (PRW39172)


Aliases : PRW39172

Description : Mismatch repair endonuclease PMS2


Gene families : OG_01_0000591 (OrthoFinder) Phylogenetic Tree(s): OG0000591_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000014.1_cds_PRW39172.1_2482
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold1096.5 1096.5 DNA mismatch repair protein, S5 domain 2-like;... 0.01 OrthoFinder
Transcript_contig_57359 57359 DNA mismatch repair protein, S5 domain 2-like;... 0.02 OrthoFinder
Transcript_contig_89581 89581 MutL, C-terminal, dimerisation [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006298 mismatch repair IEA Interproscan
MF GO:0030983 mismatched DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004190 aspartic-type endopeptidase activity IEP Enrichment
MF GO:0004525 ribonuclease III activity IEP Enrichment
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Enrichment
BP GO:0006099 tricarboxylic acid cycle IEP Enrichment
BP GO:0006743 ubiquinone metabolic process IEP Enrichment
BP GO:0006744 ubiquinone biosynthetic process IEP Enrichment
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Enrichment
BP GO:0015977 carbon fixation IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Enrichment
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Enrichment
CC GO:0030127 COPII vesicle coat IEP Enrichment
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Enrichment
BP GO:0042180 cellular ketone metabolic process IEP Enrichment
BP GO:0042181 ketone biosynthetic process IEP Enrichment
MF GO:0070001 aspartic-type peptidase activity IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:1901661 quinone metabolic process IEP Enrichment
BP GO:1901663 quinone biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR014790 MutL_C 567 728
IPR013507 DNA_mismatch_S5_2-like 240 362
No external refs found!