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  5. lcl|LHPG02000014.1_cds_PRW39136.1_2764

lcl|LHPG02000014.1_cds_PRW39136.1_2764 (PRW39136)


Aliases : PRW39136

Description : 40S ribosomal S2-4


Gene families : OG_01_0002382 (OrthoFinder) Phylogenetic Tree(s): OG0002382_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000014.1_cds_PRW39136.1_2764
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020961.135 tig00020961_g16755.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 OrthoFinder
Cre01.g039250 30788560, RPS2 Protein biosynthesis.cytosolic ribosome.small subunit... 0.16 OrthoFinder
Cz06g19150.t1 No alias Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.1 OrthoFinder
Dusal.0108s00005.1 33189508 Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.06 OrthoFinder
OT_17G01420.1 No alias Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.17 OrthoFinder
PTI_17G01720.1 No alias Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.18 OrthoFinder
Sro693_g188270.1 Contig3212.g25392 40S ribosomal protein S2 (Fragment) 0.15 OrthoFinder
TP10G03790.1 No alias Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.05 OrthoFinder
Transcript_contig_79122 79122 Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.04 OrthoFinder
Vocar.0001s0807.1 32884773 Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.08 OrthoFinder
XM_002502219.1 MICPUN_90856, 90856 Ribosomal protein S5, N-terminal; Ribosomal protein S5,... 0.04 OrthoFinder
XM_003063973.1 MicpuC2_49763, 49763 Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.06 OrthoFinder
lcl|BLLF01000722.1_cds_GFH14405.1_8882 HaLaN_10454, GFH14405 Component of cytosolic 80S ribosome and 40S small subunit 0.02 OrthoFinder
lcl|BLLF01001424.1_cds_GFH19209.1_13686 HaLaN_16121, GFH19209 Component of cytosolic 80S ribosome and 40S small subunit 0.04 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60442.1_4146 PRW60442 40S ribosomal S2-4 0.03 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497763.1_6716 KAA8497763 40S ribosomal protein S2 0.12 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004176 ATP-dependent peptidase activity IEP Enrichment
MF GO:0004556 alpha-amylase activity IEP Enrichment
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Enrichment
MF GO:0004779 sulfate adenylyltransferase activity IEP Enrichment
MF GO:0004781 sulfate adenylyltransferase (ATP) activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
BP GO:0006099 tricarboxylic acid cycle IEP Enrichment
BP GO:0006813 potassium ion transport IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Enrichment
BP GO:0009116 nucleoside metabolic process IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
BP GO:0015977 carbon fixation IEP Enrichment
MF GO:0016160 amylase activity IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
MF GO:0070566 adenylyltransferase activity IEP Enrichment
BP GO:1901657 glycosyl compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR005324 Ribosomal_S5_C 169 240
IPR013810 Ribosomal_S5_N 86 150
No external refs found!