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  5. lcl|LHPG02000014.1_cds_PRW39079.1_2503

lcl|LHPG02000014.1_cds_PRW39079.1_2503 (PRW39079)


Aliases : PRW39079

Description : PR-1


Gene families : OG_01_0000144 (OrthoFinder) Phylogenetic Tree(s): OG0000144_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000014.1_cds_PRW39079.1_2503
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
Cre03.g183300 30787362 No description available 0.02 OrthoFinder
Cre09.g415600 30781240 No description available 0.05 OrthoFinder
OT_06G01870.1 No alias Carbohydrate binding module family 20 [Interproscan]. 0.05 OrthoFinder
OT_10G00460.1 No alias Carbohydrate binding module family 20 [Interproscan]. 0.03 OrthoFinder
Transcript_contig_2548 2548 Carbohydrate binding module family 20 [Interproscan]. 0.03 OrthoFinder
Transcript_contig_56883 56883 Carbohydrate binding module family 20; PPC89 centrosome... 0.04 OrthoFinder
Vocar.0001s1160.1 32885421 Carbohydrate binding module family 20 [Interproscan]. 0.03 OrthoFinder
Vocar.0011s0329.1 32895161 Carbohydrate binding module family 20 [Interproscan]. 0.02 OrthoFinder
XM_003060790.1 MicpuC2_41138, 41138 Carbohydrate-binding module family 20 protein 0.02 OrthoFinder
lcl|BLLF01000260.1_cds_GFH09765.1_4242 HaLaN_04969, GFH09765 CBM20 domain-containing protein 0.04 OrthoFinder
lcl|BLLF01000975.1_cds_GFH16286.1_10763 HaLaN_12676, GFH16286 Hypothetical protein 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:2001070 starch binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0009512 cytochrome b6f complex IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009654 photosystem II oxygen evolving complex IEP Enrichment
BP GO:0017004 cytochrome complex assembly IEP Enrichment
CC GO:0019898 extrinsic component of membrane IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
MF GO:0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity IEP Enrichment
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Enrichment
CC GO:0070069 cytochrome complex IEP Enrichment
InterPro domains Description Start Stop
IPR002044 CBM_fam20 150 235
IPR014044 CAP_domain 16 125
No external refs found!