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  5. lcl|LHPG02000014.1_cds_PRW39058.1_2661

lcl|LHPG02000014.1_cds_PRW39058.1_2661 (PRW39058)


Aliases : PRW39058

Description : Endoplasmic reticulum-Golgi intermediate compartment 3


Gene families : OG_01_0000778 (OrthoFinder) Phylogenetic Tree(s): OG0000778_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000014.1_cds_PRW39058.1_2661
Cluster HCCA: Cluster_70

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000691.11 tig00000691_g3161.t1 Protein disulfide-isomerase 5-4 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cpa|evm.model.tig00021433.16 tig00021433_g21270.t1 No description available 0.04 OrthoFinder
OT_10G00120.1 No alias Endoplasmic reticulum vesicle transporter, N-terminal;... 0.03 OrthoFinder
Sro1721_g293520.1 Contig2994.g23792 Reticulum-Golgi intermediate compartment protein 3 0.02 OrthoFinder
XM_003064688.1 MicpuC2_4062, 4062 Endoplasmic reticulum vesicle transporter, N-terminal;... 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP Enrichment
MF GO:0003951 NAD+ kinase activity IEP Enrichment
MF GO:0004470 malic enzyme activity IEP Enrichment
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Enrichment
MF GO:0004820 glycine-tRNA ligase activity IEP Enrichment
MF GO:0005506 iron ion binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006302 double-strand break repair IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006426 glycyl-tRNA aminoacylation IEP Enrichment
BP GO:0006739 NADP metabolic process IEP Enrichment
BP GO:0006741 NADP biosynthetic process IEP Enrichment
BP GO:0016226 iron-sulfur cluster assembly IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
MF GO:0016615 malate dehydrogenase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019359 nicotinamide nucleotide biosynthetic process IEP Enrichment
BP GO:0019362 pyridine nucleotide metabolic process IEP Enrichment
BP GO:0019363 pyridine nucleotide biosynthetic process IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
BP GO:0031163 metallo-sulfur cluster assembly IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
BP GO:0046496 nicotinamide nucleotide metabolic process IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0072524 pyridine-containing compound metabolic process IEP Enrichment
BP GO:0072525 pyridine-containing compound biosynthetic process IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
InterPro domains Description Start Stop
IPR012936 Erv_C 161 384
IPR039542 Erv_N 13 105
No external refs found!