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  5. lcl|LHPG02000013.1_cds_PRW44607.1_2322

lcl|LHPG02000013.1_cds_PRW44607.1_2322 (PRW44607)


Aliases : PRW44607

Description : Ribosomal large subunit pseudouridine synthase B


Gene families : OG_01_0000212 (OrthoFinder) Phylogenetic Tree(s): OG0000212_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000013.1_cds_PRW44607.1_2322
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020710.129 tig00020710_g13393.t1 RNA processing.RNA... 0.02 OrthoFinder
Cre02.g095121 30785798 RNA processing.RNA... 0.03 OrthoFinder
Cz07g07220.t1 No alias RNA-binding S4 domain [Interproscan]. 0.05 OrthoFinder
Dusal.0755s00004.1 33194805 Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.05 OrthoFinder
OT_06G04650.1 No alias Pseudouridine synthase, RsuA/RluA; RNA-binding S4 domain... 0.14 OrthoFinder
PTI_04G00780.1 No alias RNA-binding S4 domain; Pseudouridine synthase, RsuA/RluA... 0.02 OrthoFinder
Sro442_g143800.1 Contig509.g6751 Ribosomal small subunit pseudouridine synthase A 0.05 OrthoFinder
TP06G05090.1 No alias Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.04 OrthoFinder
Transcript_contig_57854 57854 RNA-binding S4 domain [Interproscan]. 0.07 OrthoFinder
Vocar.0006s0148.1 32894324 RNA-binding S4 domain; Pseudouridine synthase, RsuA/RluA... 0.02 OrthoFinder
XM_002507815.1 MICPUN_69191, 69191 Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.03 OrthoFinder
XM_002508848.1 MICPUN_72176, 72176 Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.02 OrthoFinder
XM_003062138.1 MicpuC2_6566, 6566 Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.09 OrthoFinder
lcl|BLLF01000077.1_cds_GFH07162.1_1639 HaLaN_01923, GFH07162 S4 RNA-binding domain-containing protein 0.08 OrthoFinder
lcl|BLLF01001183.1_cds_GFH17660.1_12137 HaLaN_14340, GFH17660 Pseudouridine synthase 0.02 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496505.1_234 KAA8496505 Putative RNA pseudouridine synthase 0.09 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495941.1_1939 KAA8495941 Putative RNA pseudouridine synthase 0.02 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493254.1_9555 KAA8493254 23S rRNA pseudouridine 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0009451 RNA modification IEA Interproscan
MF GO:0009982 pseudouridine synthase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004107 chorismate synthase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006536 glutamate metabolic process IEP Enrichment
BP GO:0006537 glutamate biosynthetic process IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
MF GO:0015930 glutamate synthase activity IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0042255 ribosome assembly IEP Enrichment
BP GO:0042256 mature ribosome assembly IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
MF GO:0043022 ribosome binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043648 dicarboxylic acid metabolic process IEP Enrichment
BP GO:0043650 dicarboxylic acid biosynthetic process IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0044283 small molecule biosynthetic process IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
BP GO:0070925 organelle assembly IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR006145 PsdUridine_synth_RsuA/RluA 164 269
IPR002942 S4_RNA-bd 101 143
No external refs found!