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  5. lcl|LHPG02000013.1_cds_PRW44413.1_2299

lcl|LHPG02000013.1_cds_PRW44413.1_2299 (PRW44413)


Aliases : PRW44413

Description : DNA replication licensing factor MCM3


Gene families : OG_01_0003371 (OrthoFinder) Phylogenetic Tree(s): OG0003371_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000013.1_cds_PRW44413.1_2299
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
Cre06.g295700 30778933, MCM3 Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.09 OrthoFinder
Cz08g29130.t1 No alias MCM N-terminal domain; MCM, AAA-lid domain; MCM OB... 0.08 OrthoFinder
Dusal.0654s00001.1 33186758 MCM domain; MCM OB domain; MCM, AAA-lid domain [Interproscan]. 0.02 OrthoFinder
EOD39699 No alias MCM OB domain; MCM N-terminal domain; MCM, AAA-lid... 0.04 OrthoFinder
PTI_03G02720.1 No alias MCM domain; MCM, AAA-lid domain; MCM OB domain [Interproscan]. 0.05 OrthoFinder
Sro26_g017530.1 Contig2432.g19924 Licensing factor MCM3 0.02 OrthoFinder
TP06G01060.1 No alias MCM, AAA-lid domain; MCM OB domain; MCM domain [Interproscan]. 0.03 OrthoFinder
Transcript_contig_53738 53738 MCM, AAA-lid domain; MCM domain; MCM N-terminal domain;... 0.07 OrthoFinder
Vocar.0021s0184.1 32896084 MCM N-terminal domain; MCM, AAA-lid domain; MCM OB... 0.05 OrthoFinder
XM_002507194.1 MICPUN_77461, 77461 MCM domain; MCM, AAA-lid domain; MCM OB domain; MCM... 0.02 OrthoFinder
lcl|BLLF01000441.1_cds_GFH11838.1_6315 HaLaN_07407, GFH11838 DNA helicase 0.04 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493736.1_4498 KAA8493736 DNA replication licensing factor mcm3 0.06 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006270 DNA replication initiation IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000444 MIS12/MIND type complex IEP Enrichment
CC GO:0000775 chromosome, centromeric region IEP Enrichment
CC GO:0000776 kinetochore IEP Enrichment
CC GO:0000796 condensin complex IEP Enrichment
CC GO:0000818 nuclear MIS12/MIND complex IEP Enrichment
BP GO:0002376 immune system process IEP Enrichment
MF GO:0003896 DNA primase activity IEP Enrichment
MF GO:0004190 aspartic-type endopeptidase activity IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006269 DNA replication, synthesis of RNA primer IEP Enrichment
BP GO:0006323 DNA packaging IEP Enrichment
BP GO:0006553 lysine metabolic process IEP Enrichment
BP GO:0006955 immune response IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
BP GO:0007059 chromosome segregation IEP Enrichment
BP GO:0007062 sister chromatid cohesion IEP Enrichment
BP GO:0007064 mitotic sister chromatid cohesion IEP Enrichment
BP GO:0007076 mitotic chromosome condensation IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008080 N-acetyltransferase activity IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
BP GO:0008608 attachment of spindle microtubules to kinetochore IEP Enrichment
MF GO:0008837 diaminopimelate epimerase activity IEP Enrichment
MF GO:0008942 nitrite reductase [NAD(P)H] activity IEP Enrichment
BP GO:0009085 lysine biosynthetic process IEP Enrichment
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Enrichment
BP GO:0009262 deoxyribonucleotide metabolic process IEP Enrichment
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP Enrichment
BP GO:0009605 response to external stimulus IEP Enrichment
BP GO:0009607 response to biotic stimulus IEP Enrichment
BP GO:0009617 response to bacterium IEP Enrichment
BP GO:0009620 response to fungus IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
MF GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors IEP Enrichment
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Enrichment
MF GO:0016854 racemase and epimerase activity IEP Enrichment
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
BP GO:0022414 reproductive process IEP Enrichment
BP GO:0030261 chromosome condensation IEP Enrichment
CC GO:0031262 Ndc80 complex IEP Enrichment
CC GO:0031390 Ctf18 RFC-like complex IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP Enrichment
BP GO:0042742 defense response to bacterium IEP Enrichment
BP GO:0043207 response to external biotic stimulus IEP Enrichment
BP GO:0043648 dicarboxylic acid metabolic process IEP Enrichment
BP GO:0044419 biological process involved in interspecies interaction between organisms IEP Enrichment
BP GO:0045132 meiotic chromosome segregation IEP Enrichment
BP GO:0046451 diaminopimelate metabolic process IEP Enrichment
MF GO:0046857 oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor IEP Enrichment
MF GO:0047661 amino-acid racemase activity IEP Enrichment
BP GO:0050832 defense response to fungus IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0051315 attachment of mitotic spindle microtubules to kinetochore IEP Enrichment
BP GO:0051707 response to other organism IEP Enrichment
MF GO:0070001 aspartic-type peptidase activity IEP Enrichment
MF GO:0070569 uridylyltransferase activity IEP Enrichment
BP GO:0098542 defense response to other organism IEP Enrichment
CC GO:0098687 chromosomal region IEP Enrichment
MF GO:0098809 nitrite reductase activity IEP Enrichment
BP GO:0098813 nuclear chromosome segregation IEP Enrichment
CC GO:0099080 supramolecular complex IEP Enrichment
BP GO:1903046 meiotic cell cycle process IEP Enrichment
BP GO:1903047 mitotic cell cycle process IEP Enrichment
InterPro domains Description Start Stop
IPR027925 MCM_N 14 123
IPR033762 MCM_OB 118 247
IPR001208 MCM_dom 286 508
IPR006652 Kelch_1 956 1002
IPR006652 Kelch_1 1011 1062
IPR041562 MCM_lid 566 646
No external refs found!