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  5. lcl|LHPG02000012.1_cds_PRW45027.1_1889

lcl|LHPG02000012.1_cds_PRW45027.1_1889 (PRW45027)


Aliases : PRW45027

Description : 60S ribosomal L8


Gene families : OG_01_0003494 (OrthoFinder) Phylogenetic Tree(s): OG0003494_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000012.1_cds_PRW45027.1_1889
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020965.22 tig00020965_g16838.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.2 OrthoFinder
Cre12.g535851 30793369 Protein biosynthesis.cytosolic ribosome.large subunit... 0.17 OrthoFinder
Cz05g13020.t1 No alias Ribosomal Proteins L2, RNA binding domain; Ribosomal... 0.09 OrthoFinder
Dusal.0446s00012.1 33201126 Ribosomal protein L2, C-terminal; Ribosomal Proteins L2,... 0.08 OrthoFinder
EOD38182 No alias Ribosomal Proteins L2, RNA binding domain; Ribosomal... 0.12 OrthoFinder
OT_04G01870.1 No alias Ribosomal Proteins L2, RNA binding domain; Ribosomal... 0.18 OrthoFinder
PTI_11G02510.1 No alias Ribosomal Proteins L2, RNA binding domain; Ribosomal... 0.19 OrthoFinder
Sro1384_g268110.1 Contig2234.g18573 60S ribosomal protein L8 0.21 OrthoFinder
TP14G02630.1 No alias Ribosomal protein L2, C-terminal; Ribosomal Proteins L2,... 0.14 OrthoFinder
Vocar.0043s0070.1 32886882 Ribosomal protein L2, C-terminal; Ribosomal Proteins L2,... 0.09 OrthoFinder
XM_002504886.1 MICPUN_95460, 95460 Ribosomal Proteins L2, RNA binding domain; Ribosomal... 0.18 OrthoFinder
XM_003060635.1 MicpuC2_49650, 49650 Ribosomal Proteins L2, RNA binding domain; Ribosomal... 0.06 OrthoFinder
lcl|BLLF01003547.1_cds_GFH27617.1_22094 HaLaN_25972, GFH27617 Ribosomal_L2_C domain-containing protein 0.02 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8494059.1_3923 KAA8494059 60S ribosomal protein L8 0.12 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0004176 ATP-dependent peptidase activity IEP Enrichment
MF GO:0004367 glycerol-3-phosphate dehydrogenase [NAD+] activity IEP Enrichment
MF GO:0004751 ribose-5-phosphate isomerase activity IEP Enrichment
BP GO:0006072 glycerol-3-phosphate metabolic process IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
BP GO:0006813 potassium ion transport IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Enrichment
MF GO:0016872 intramolecular lyase activity IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
BP GO:0046168 glycerol-3-phosphate catabolic process IEP Enrichment
MF GO:0047952 glycerol-3-phosphate dehydrogenase [NAD(P)+] activity IEP Enrichment
BP GO:0052646 alditol phosphate metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:1901136 carbohydrate derivative catabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR022666 Rbsml_prot_L2_RNA-bd_dom 13 89
IPR022669 Ribosomal_L2_C 97 229
IPR001005 SANT/Myb 624 668
No external refs found!