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  5. lcl|LHPG02000012.1_cds_PRW44968.1_1935

lcl|LHPG02000012.1_cds_PRW44968.1_1935 (PRW44968)


Aliases : PRW44968

Description : 30S ribosomal S5


Gene families : OG_01_0000781 (OrthoFinder) Phylogenetic Tree(s): OG0000781_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000012.1_cds_PRW44968.1_1935
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020531.55 tig00020531_g10061.t1 No description available 0.02 OrthoFinder
Cre09.g407100 30780731 No description available 0.03 OrthoFinder
Cre16.g659950 30778100, PRPS5 Protein biosynthesis.organelle translation... 0.15 OrthoFinder
Cz12g28110.t1 No alias Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.11 OrthoFinder
Dusal.0179s00014.1 33190135 Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.02 OrthoFinder
OT_10G02160.1 No alias Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.02 OrthoFinder
OT_15G00990.1 No alias Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.11 OrthoFinder
Sro1022_g232380.1 Contig2862.g22952 Protein S5 0.04 OrthoFinder
Sro51_chlor_g029640.1 Rps5 Rps5 0.03 OrthoFinder
SymbC1.scaffold2.900 2.900 Ribosomal protein S5, N-terminal; Ribosomal protein S5,... 0.02 OrthoFinder
TPCG02620.1 No alias Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.04 OrthoFinder
Transcript_contig_54625 54625 Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.02 OrthoFinder
Transcript_contig_56867 56867 Ribosomal protein S5, N-terminal [Interproscan]. 0.03 OrthoFinder
XM_002506775.1 MICPUN_92603, 92603 Ribosomal protein S5, N-terminal; Ribosomal protein S5,... 0.11 OrthoFinder
XM_003061002.1 MicpuC2_48160, 48160 Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.06 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003747 translation release factor activity IEP Enrichment
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Enrichment
MF GO:0003997 acyl-CoA oxidase activity IEP Enrichment
MF GO:0004356 glutamate-ammonia ligase activity IEP Enrichment
MF GO:0004556 alpha-amylase activity IEP Enrichment
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP Enrichment
MF GO:0005509 calcium ion binding IEP Enrichment
CC GO:0005777 peroxisome IEP Enrichment
BP GO:0006415 translational termination IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
BP GO:0006541 glutamine metabolic process IEP Enrichment
BP GO:0006542 glutamine biosynthetic process IEP Enrichment
BP GO:0006635 fatty acid beta-oxidation IEP Enrichment
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Enrichment
BP GO:0006813 potassium ion transport IEP Enrichment
MF GO:0008079 translation termination factor activity IEP Enrichment
BP GO:0009062 fatty acid catabolic process IEP Enrichment
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
BP GO:0016042 lipid catabolic process IEP Enrichment
BP GO:0016054 organic acid catabolic process IEP Enrichment
MF GO:0016160 amylase activity IEP Enrichment
MF GO:0016211 ammonia ligase activity IEP Enrichment
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Enrichment
MF GO:0016859 cis-trans isomerase activity IEP Enrichment
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Enrichment
CC GO:0018995 host cellular component IEP Enrichment
BP GO:0019395 fatty acid oxidation IEP Enrichment
BP GO:0019725 cellular homeostasis IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
BP GO:0022411 cellular component disassembly IEP Enrichment
BP GO:0030258 lipid modification IEP Enrichment
MF GO:0032977 membrane insertase activity IEP Enrichment
BP GO:0032984 protein-containing complex disassembly IEP Enrichment
CC GO:0033643 host cell part IEP Enrichment
CC GO:0033646 host intracellular part IEP Enrichment
CC GO:0033647 host intracellular organelle IEP Enrichment
CC GO:0033648 host intracellular membrane-bounded organelle IEP Enrichment
BP GO:0034440 lipid oxidation IEP Enrichment
CC GO:0042025 host cell nucleus IEP Enrichment
CC GO:0042579 microbody IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0043624 cellular protein complex disassembly IEP Enrichment
BP GO:0044242 cellular lipid catabolic process IEP Enrichment
BP GO:0045454 cell redox homeostasis IEP Enrichment
BP GO:0046395 carboxylic acid catabolic process IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
BP GO:0072329 monocarboxylic acid catabolic process IEP Enrichment
MF GO:0140104 molecular carrier activity IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
InterPro domains Description Start Stop
IPR013810 Ribosomal_S5_N 77 141
IPR005324 Ribosomal_S5_C 154 224
No external refs found!