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  5. lcl|LHPG02000012.1_cds_PRW44964.1_1851

lcl|LHPG02000012.1_cds_PRW44964.1_1851 (PRW44964)


Aliases : PRW44964

Description : 40S ribosomal S6 isoform A


Gene families : OG_01_0002771 (OrthoFinder) Phylogenetic Tree(s): OG0002771_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000012.1_cds_PRW44964.1_1851
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000704.73 tig00000704_g3357.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.14 OrthoFinder
Cre09.g400650 30780656, RPS6 Protein biosynthesis.cytosolic ribosome.small subunit... 0.14 OrthoFinder
Cz06g36040.t1 No alias Ribosomal protein S6e [Interproscan]. 0.18 OrthoFinder
Dusal.0276s00013.1 33203073 Ribosomal protein S6e [Interproscan]. 0.05 OrthoFinder
EOD22278 No alias Ribosomal protein S6e [Interproscan]. 0.08 OrthoFinder
OT_03G02800.1 No alias Ribosomal protein S6e [Interproscan]. 0.14 OrthoFinder
PTI_03G02600.1 No alias Ribosomal protein S6e [Interproscan]. 0.15 OrthoFinder
Sro169_g075080.1 Contig4412.g33128 40S ribosomal protein S6 0.17 OrthoFinder
SymbC1.scaffold2867.6 2867.6 Ribosomal protein S6e [Interproscan]. 0.04 OrthoFinder
TP14G02490.1 No alias Ribosomal protein S6e [Interproscan]. 0.16 OrthoFinder
Transcript_contig_80061 80061 Ribosomal protein S6e [Interproscan]. 0.04 OrthoFinder
Vocar.0008s0246.1 32896957 Ribosomal protein S6e [Interproscan]. 0.12 OrthoFinder
XM_002499404.1 MICPUN_90125, 90125 Ribosomal protein S6e [Interproscan]. 0.12 OrthoFinder
XM_003055713.1 MicpuC2_49409, 49409 Ribosomal protein S6e [Interproscan]. 0.04 OrthoFinder
lcl|BLLF01000178.1_cds_GFH08697.1_3174 HaLaN_03704, GFH08697 40S ribosomal protein S6 0.04 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8494269.1_4133 KAA8494269 40S ribosomal protein S6 0.11 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004556 alpha-amylase activity IEP Enrichment
MF GO:0004751 ribose-5-phosphate isomerase activity IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
InterPro domains Description Start Stop
IPR001377 Ribosomal_S6e 1 128
No external refs found!