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  5. Cpa|evm.model.tig00000025.50

Cpa|evm.model.tig00000025.50 (tig00000025_g7954.t1)


Aliases : tig00000025_g7954.t1

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL3 component


Gene families : OG_01_0002780 (OrthoFinder) Phylogenetic Tree(s): OG0002780_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000025.50
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
Cre10.g417700 30789966, RPL3 Protein biosynthesis.cytosolic ribosome.large subunit... 0.16 OrthoFinder
Cz12g24070.t1 No alias Ribosomal protein L3 [Interproscan]. 0.13 OrthoFinder
Dusal.0375s00002.1 33193949 Ribosomal protein L3 [Interproscan]. 0.14 OrthoFinder
EOD37150 No alias 60S ribosomal protein L3 [Ensembl]. 0.07 OrthoFinder
OT_01G00490.1 No alias Ribosomal protein L3 [Interproscan]. 0.27 OrthoFinder
PTI_11G03220.1 No alias Ribosomal protein L3 [Interproscan]. 0.3 OrthoFinder
Sro49_g028920.1 Contig2054.g17642 60S ribosomal protein L3 0.31 OrthoFinder
Sro691_g187740.1 Contig1133.g10869 60S ribosomal protein L3 0.38 OrthoFinder
TP07G02750.1 No alias Ribosomal protein L3 [Interproscan]. 0.45 OrthoFinder
Vocar.0016s0012.1 32897929 Ribosomal protein L3 [Interproscan]. 0.14 OrthoFinder
XM_002507702.1 MICPUN_89851, 89851 Ribosomal protein L3 0.34 OrthoFinder
lcl|BLLF01003811.1_cds_GFH28271.1_22748 HaLaN_26740, GFH28271 Ribosomal protein L3 0.06 OrthoFinder
lcl|LHPG02000012.1_cds_PRW44927.1_1937 PRW44927 60S ribosomal L3 0.2 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495890.1_1888 KAA8495890 60S ribosomal protein L3 0.17 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR000597 Ribosomal_L3 1 367
No external refs found!