lcl|LHPG02000010.1_cds_PRW50821.1_1186 (PRW50821)

Aliases : PRW50821

Description : Fanconi anemia group J

Gene families : OG_01_0000361 (OrthoFinder) Phylogenetic Tree(s): OG0000361_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: lcl\|LHPG02000010.1_cds_PRW50821.1_1186
Cluster	HCCA: Cluster_7

Target	Alias	Description	ECC score	Gene Family Method
Cz01g29040.t1	No alias	ATP-dependent helicase, C-terminal [Interproscan].	0.02	OrthoFinder
Cz02g00030.t1	No alias	ATP-dependent helicase, C-terminal; DEAD2 [Interproscan].	0.04	OrthoFinder
Sro1149_g246570.1	Contig1585.g14401	Regulator of telomere elongation helicase 1	0.03	OrthoFinder
TP03G00560.1	No alias	ATP-dependent helicase, C-terminal; DEAD2 [Interproscan].	0.02	OrthoFinder
Vocar.0001s1241.1	32885467	ATP-dependent helicase, C-terminal; DEAD2 [Interproscan].	0.02	OrthoFinder
Vocar.0008s0190.1	32897132	ATP-dependent helicase, C-terminal; DEAD2 [Interproscan].	0.02	OrthoFinder
Vocar.0021s0177.1	32895947	ATP-dependent helicase, C-terminal; DEAD2 [Interproscan].	0.03	OrthoFinder
XM_002508845.1	MICPUN_85702, 85702	DEAD2; ATP-dependent helicase, C-terminal [Interproscan].	0.03	OrthoFinder
lcl\|BLLF01001680.1_cds_GFH20692.1_15169	HaLaN_17856, GFH20692	DEAD2 [Interproscan].	0.02	OrthoFinder
lcl\|BLLF01004846.1_cds_GFH30349.1_24826	HaLaN_29184, GFH30349	Helicase ATP-binding domain-containing protein	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003678	DNA helicase activity	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	IEA	Interproscan
BP	GO:0006260	DNA replication	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008094	ATPase, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEA	Interproscan
MF	GO:0016887	ATPase	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000808	origin recognition complex	IEP	Enrichment
MF	GO:0003684	damaged DNA binding	IEP	Enrichment
MF	GO:0003885	D-arabinono-1,4-lactone oxidase activity	IEP	Enrichment
BP	GO:0006281	DNA repair	IEP	Enrichment
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	Enrichment
BP	GO:0008272	sulfate transport	IEP	Enrichment
MF	GO:0015116	sulfate transmembrane transporter activity	IEP	Enrichment
MF	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups	IEP	Enrichment
MF	GO:0016899	oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor	IEP	Enrichment
BP	GO:0033554	cellular response to stress	IEP	Enrichment
BP	GO:0051716	cellular response to stimulus	IEP	Enrichment
BP	GO:0072348	sulfur compound transport	IEP	Enrichment
MF	GO:1901682	sulfur compound transmembrane transporter activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR007199	Rep_factor-A_N	1227	1325
IPR006555	ATP-dep_Helicase_C	616	792
IPR010614	DEAD_2	152	306

External Links

No external refs found!

lcl|LHPG02000010.1_cds_PRW50821.1_1186 (PRW50821)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation