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  5. lcl|LHPG02000009.1_cds_PRW56057.1_9988

lcl|LHPG02000009.1_cds_PRW56057.1_9988 (PRW56057)


Aliases : PRW56057

Description : Polyubiquitin


Gene families : OG_01_0000054 (OrthoFinder) Phylogenetic Tree(s): OG0000054_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000009.1_cds_PRW56057.1_9988
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
Cz11g28020.t1 No alias Ubiquitin-like domain [Interproscan]. 0.03 OrthoFinder
Cz13g16210.t1 No alias Ubiquitin-like domain [Interproscan]. 0.02 OrthoFinder
EOD39616 No alias Superoxide dismutase, Nickel-type [Interproscan]. 0.02 OrthoFinder
PTI_07G02070.1 No alias Ubiquitin-like domain; Ribosomal protein S27a [Interproscan]. 0.02 OrthoFinder
Sro2967_g341140.1 Contig4428.g33229 Polyubiquitin (Fragment) 0.02 OrthoFinder
XM_003058637.1 MicpuC2_17541, 17541 Ribosomal protein L40e; Ubiquitin-like domain [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0003954 NADH dehydrogenase activity IEP Enrichment
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP Enrichment
MF GO:0004602 glutathione peroxidase activity IEP Enrichment
MF GO:0004784 superoxide dismutase activity IEP Enrichment
CC GO:0005739 mitochondrion IEP Enrichment
CC GO:0005783 endoplasmic reticulum IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
BP GO:0006801 superoxide metabolic process IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Enrichment
MF GO:0008410 CoA-transferase activity IEP Enrichment
MF GO:0016209 antioxidant activity IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Enrichment
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Enrichment
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Enrichment
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Enrichment
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Enrichment
MF GO:0051920 peroxiredoxin activity IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
BP GO:0072593 reactive oxygen species metabolic process IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
InterPro domains Description Start Stop
IPR000626 Ubiquitin-like_dom 307 378
IPR000626 Ubiquitin-like_dom 155 226
IPR000626 Ubiquitin-like_dom 3 74
IPR000626 Ubiquitin-like_dom 231 302
IPR000626 Ubiquitin-like_dom 79 150
No external refs found!