lcl|LHPG02000008.1_cds_PRW56661.1_9495 (PRW56661)

Aliases : PRW56661

Description : Transcription factor jumonji domain

Gene families : OG_01_0000339 (OrthoFinder) Phylogenetic Tree(s): OG0000339_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: lcl\|LHPG02000008.1_cds_PRW56661.1_9495
Cluster	HCCA: Cluster_97

Target	Alias	Description	ECC score	Gene Family Method
Cz15g18170.t1	No alias	JmjC domain; JmjN domain [Interproscan].	0.02	OrthoFinder
Dusal.0267s00005.1	33198975	JmjC domain [Interproscan].	0.02	OrthoFinder
EOD29970	No alias	JmjC domain [Interproscan].	0.02	OrthoFinder
Sro797_g203900.1	Contig4746.g35166	Specific demethylase 5D	0.02	OrthoFinder
Transcript_contig_54527	54527	Zinc finger, C5HC2-type; JmjC domain; ARID DNA-binding...	0.02	OrthoFinder
Transcript_contig_54742	54742	JmjN domain; JmjC domain [Interproscan].	0.02	OrthoFinder
XM_003061238.1	MicpuC2_60865, 60865	JmjN/JmjC protein	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006352	DNA-templated transcription, initiation	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003684	damaged DNA binding	IEP	Enrichment
MF	GO:0004514	nicotinate-nucleotide diphosphorylase (carboxylating) activity	IEP	Enrichment
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Enrichment
BP	GO:0006259	DNA metabolic process	IEP	Enrichment
BP	GO:0006281	DNA repair	IEP	Enrichment
BP	GO:0006351	transcription, DNA-templated	IEP	Enrichment
BP	GO:0006729	tetrahydrobiopterin biosynthetic process	IEP	Enrichment
BP	GO:0006950	response to stress	IEP	Enrichment
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	Enrichment
MF	GO:0008124	4-alpha-hydroxytetrahydrobiopterin dehydratase activity	IEP	Enrichment
BP	GO:0009435	NAD biosynthetic process	IEP	Enrichment
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Enrichment
MF	GO:0030151	molybdenum ion binding	IEP	Enrichment
BP	GO:0033554	cellular response to stress	IEP	Enrichment
BP	GO:0034311	diol metabolic process	IEP	Enrichment
BP	GO:0034312	diol biosynthetic process	IEP	Enrichment
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	Enrichment
MF	GO:0043169	cation binding	IEP	Enrichment
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Enrichment
BP	GO:0046146	tetrahydrobiopterin metabolic process	IEP	Enrichment
BP	GO:0046165	alcohol biosynthetic process	IEP	Enrichment
BP	GO:0046173	polyol biosynthetic process	IEP	Enrichment
BP	GO:0050896	response to stimulus	IEP	Enrichment
BP	GO:0051716	cellular response to stimulus	IEP	Enrichment
BP	GO:0097659	nucleic acid-templated transcription	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR003347	JmjC_dom	451	567
IPR003349	JmjN	20	55
IPR004198	Znf_C5HC2	690	741
IPR007627	RNA_pol_sigma70_r2	2716	2782
IPR013637	Lys_sp_deMease-like_dom	883	1101
IPR013637	Lys_sp_deMease-like_dom	1109	1303
IPR013637	Lys_sp_deMease-like_dom	1406	1726
IPR001606	ARID_dom	96	183
IPR019787	Znf_PHD-finger	1782	1832
IPR019787	Znf_PHD-finger	281	327

External Links

No external refs found!

lcl|LHPG02000008.1_cds_PRW56661.1_9495 (PRW56661)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation