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  5. lcl|LHPG02000008.1_cds_PRW56499.1_9476

lcl|LHPG02000008.1_cds_PRW56499.1_9476 (PRW56499)


Aliases : PRW56499

Description : Squamosa promoter-binding-like (SBP domain) transcription factor family


Gene families : OG_01_0000101 (OrthoFinder) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000008.1_cds_PRW56499.1_9476
Cluster HCCA: Cluster_99

Target Alias Description ECC score Gene Family Method Actions
Vocar.0001s1587.1 32886106 SBP domain [Interproscan]. 0.02 OrthoFinder
Vocar.0005s0367.1 32883600 SBP domain [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0042025 host cell nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Enrichment
BP GO:0006486 protein glycosylation IEP Enrichment
MF GO:0008252 nucleotidase activity IEP Enrichment
MF GO:0008253 5'-nucleotidase activity IEP Enrichment
BP GO:0009166 nucleotide catabolic process IEP Enrichment
BP GO:0009262 deoxyribonucleotide metabolic process IEP Enrichment
BP GO:0009264 deoxyribonucleotide catabolic process IEP Enrichment
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Enrichment
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
BP GO:0019439 aromatic compound catabolic process IEP Enrichment
BP GO:0034404 nucleobase-containing small molecule biosynthetic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0034655 nucleobase-containing compound catabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043413 macromolecule glycosylation IEP Enrichment
BP GO:0044270 cellular nitrogen compound catabolic process IEP Enrichment
BP GO:0046434 organophosphate catabolic process IEP Enrichment
BP GO:0046700 heterocycle catabolic process IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
MF GO:0051213 dioxygenase activity IEP Enrichment
BP GO:0070085 glycosylation IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:1901136 carbohydrate derivative catabolic process IEP Enrichment
BP GO:1901292 nucleoside phosphate catabolic process IEP Enrichment
BP GO:1901361 organic cyclic compound catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR004333 SBP_dom 49 119
No external refs found!