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  5. lcl|LHPG02000008.1_cds_PRW56415.1_9456

lcl|LHPG02000008.1_cds_PRW56415.1_9456 (PRW56415)


Aliases : PRW56415

Description : 30S ribosomal chloroplastic


Gene families : OG_01_0001076 (OrthoFinder) Phylogenetic Tree(s): OG0001076_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000008.1_cds_PRW56415.1_9456
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
Cre12.g494750 30791934, PRPS20 Protein biosynthesis.organelle translation... 0.12 OrthoFinder
Cz04g21330.t1 No alias Ribosomal protein S20 [Interproscan]. 0.09 OrthoFinder
EOD33444 No alias Ribosomal protein S20 [Interproscan]. 0.03 OrthoFinder
OT_02G02860.1 No alias Ribosomal protein S20 [Interproscan]. 0.1 OrthoFinder
SymbC1.scaffold6425.1 6425.1 Ribosomal protein S20 [Interproscan]. 0.02 OrthoFinder
Vocar.0072s0019.1 32898772 Ribosomal protein S20 [Interproscan]. 0.1 OrthoFinder
XM_002506026.1 MICPUN_63880, 63880 Ribosomal protein S20 [Interproscan]. 0.07 OrthoFinder
XM_003062448.1 MicpuC2_29322, 29322 Ribosomal protein S20 [Interproscan]. 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004197 cysteine-type endopeptidase activity IEP Enrichment
MF GO:0004556 alpha-amylase activity IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006754 ATP biosynthetic process IEP Enrichment
BP GO:0006771 riboflavin metabolic process IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
MF GO:0008234 cysteine-type peptidase activity IEP Enrichment
MF GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity IEP Enrichment
BP GO:0009110 vitamin biosynthetic process IEP Enrichment
BP GO:0009141 nucleoside triphosphate metabolic process IEP Enrichment
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP Enrichment
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP Enrichment
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP Enrichment
BP GO:0009152 purine ribonucleotide biosynthetic process IEP Enrichment
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP Enrichment
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP Enrichment
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP Enrichment
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP Enrichment
BP GO:0009231 riboflavin biosynthetic process IEP Enrichment
BP GO:0009260 ribonucleotide biosynthetic process IEP Enrichment
CC GO:0009512 cytochrome b6f complex IEP Enrichment
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Enrichment
BP GO:0015986 ATP synthesis coupled proton transport IEP Enrichment
MF GO:0016160 amylase activity IEP Enrichment
BP GO:0016485 protein processing IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
BP GO:0017004 cytochrome complex assembly IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Enrichment
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Enrichment
BP GO:0042726 flavin-containing compound metabolic process IEP Enrichment
BP GO:0042727 flavin-containing compound biosynthetic process IEP Enrichment
MF GO:0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity IEP Enrichment
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Enrichment
BP GO:0046390 ribose phosphate biosynthetic process IEP Enrichment
BP GO:0051604 protein maturation IEP Enrichment
CC GO:0070069 cytochrome complex IEP Enrichment
BP GO:0071586 CAAX-box protein processing IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
InterPro domains Description Start Stop
IPR002583 Ribosomal_S20 51 136
No external refs found!