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  5. lcl|LHPG02000007.1_cds_PRW57209.1_9238

lcl|LHPG02000007.1_cds_PRW57209.1_9238 (PRW57209)


Aliases : PRW57209

Description : Strawberry notch


Gene families : OG_01_0000467 (OrthoFinder) Phylogenetic Tree(s): OG0000467_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000007.1_cds_PRW57209.1_9238
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
Cz08g29240.t1 No alias Strawberry notch, AAA domain [Interproscan]. 0.01 OrthoFinder
SymbC1.scaffold11554.1 11554.1 Strawberry notch, AAA domain; Strawberry notch, helicase... 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP Enrichment
MF GO:0004089 carbonate dehydratase activity IEP Enrichment
MF GO:0004842 ubiquitin-protein transferase activity IEP Enrichment
BP GO:0006525 arginine metabolic process IEP Enrichment
BP GO:0006527 arginine catabolic process IEP Enrichment
BP GO:0007010 cytoskeleton organization IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
MF GO:0008792 arginine decarboxylase activity IEP Enrichment
BP GO:0009063 cellular amino acid catabolic process IEP Enrichment
BP GO:0009065 glutamine family amino acid catabolic process IEP Enrichment
BP GO:0016567 protein ubiquitination IEP Enrichment
MF GO:0016872 intramolecular lyase activity IEP Enrichment
MF GO:0019787 ubiquitin-like protein transferase activity IEP Enrichment
CC GO:0030286 dynein complex IEP Enrichment
BP GO:0032446 protein modification by small protein conjugation IEP Enrichment
BP GO:1901606 alpha-amino acid catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR039187 SNO_AAA 880 1201
IPR026937 SBNO_Helicase_C_dom 1853 2161
No external refs found!