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  5. lcl|LHPG02000007.1_cds_PRW57188.1_8811

lcl|LHPG02000007.1_cds_PRW57188.1_8811 (PRW57188)


Aliases : PRW57188

Description : 40S ribosomal S16


Gene families : OG_01_0003842 (OrthoFinder) Phylogenetic Tree(s): OG0003842_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000007.1_cds_PRW57188.1_8811
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000123.14 tig00000123_g6920.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.3 OrthoFinder
Cre13.g573351 30784543 Protein biosynthesis.cytosolic ribosome.small subunit... 0.37 OrthoFinder
Cz19g06110.t1 No alias Ribosomal protein S9 [Interproscan]. 0.08 OrthoFinder
Dusal.0024s00015.1 33202210 Ribosomal protein S9 [Interproscan]. 0.19 OrthoFinder
OT_05G03950.1 No alias Ribosomal protein S9 [Interproscan]. 0.28 OrthoFinder
PTI_01G05180.1 No alias Ribosomal protein S9 [Interproscan]. 0.37 OrthoFinder
Sro245_g097460.1 Contig3087.g24617 40S ribosomal protein S16 0.4 OrthoFinder
TP04G04250.1 No alias Ribosomal protein S9 [Interproscan]. 0.41 OrthoFinder
Transcript_contig_90600 90600 Ribosomal protein S9 [Interproscan]. 0.05 OrthoFinder
Vocar.0001s0196.1 32884947 Ribosomal protein S9 [Interproscan]. 0.22 OrthoFinder
XM_002500943.1 MICPUN_93705, 93705 Ribosomal protein S9 [Interproscan]. 0.38 OrthoFinder
XM_003056840.1 MicpuC2_62402, 62402 Ribosomal protein S9 [Interproscan]. 0.12 OrthoFinder
lcl|BLLF01003770.1_cds_GFH28167.1_22644 HaLaN_26611, GFH28167 Ribosomal protein S9 [Interproscan]. 0.06 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499795.1_8748 KAA8499795 40S ribosomal protein S16-1 0.29 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004392 heme oxygenase (decyclizing) activity IEP Enrichment
BP GO:0006788 heme oxidation IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0016872 intramolecular lyase activity IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0042168 heme metabolic process IEP Enrichment
BP GO:0042440 pigment metabolic process IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
InterPro domains Description Start Stop
IPR000754 Ribosomal_S9 9 141
No external refs found!