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  5. lcl|LHPG02000007.1_cds_PRW56968.1_9099

lcl|LHPG02000007.1_cds_PRW56968.1_9099 (PRW56968)


Aliases : PRW56968

Description : Histone


Gene families : OG_01_0000102 (OrthoFinder) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000007.1_cds_PRW56968.1_9099
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000944.18 tig00000944_g5940.t1 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre06.g264900 30779615, HTB13 Chromatin organisation.histones.H2B-type histone 0.04 OrthoFinder
Cre06.g271376 30780144 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre06.g273850 30778673, HTB7 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder
Cre06.g274250 30779155 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre06.g275800 30778604 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder
Cre06.g276550 30778890, HTB23 Chromatin organisation.histones.H2B-type histone 0.04 OrthoFinder
Cre12.g504700 30793271 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre12.g506200 30793175 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre13.g570050 30784307, HTB2 Chromatin organisation.histones.H2B-type histone 0.04 OrthoFinder
Cre13.g590750 30783880, HTB37 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder
Cre13.g591200 30784473, HTB38 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre17.g709150 30782749 Chromatin organisation.histones.H2B-type histone 0.04 OrthoFinder
Cre17.g710450 30782433 Chromatin organisation.histones.H2B-type histone 0.04 OrthoFinder
Cre17.g711750 30781954 Chromatin organisation.histones.H2B-type histone 0.04 OrthoFinder
Cre17.g713450 30782606 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre17.g714050 30782614, HTB21 Chromatin organisation.histones.H2B-type histone 0.04 OrthoFinder
Cz02g02060.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
Cz05g04190.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.04 OrthoFinder
Cz07g08190.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.04 OrthoFinder
Cz08g27120.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.04 OrthoFinder
Cz18g11110.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.04 OrthoFinder
EOD16252 No alias Histone H2A/H2B/H3 [Interproscan]. 0.01 OrthoFinder
EOD17479 No alias Histone H2A/H2B/H3 [Interproscan]. 0.01 OrthoFinder
EOD18484 No alias Histone H2A/H2B/H3 [Interproscan]. 0.01 OrthoFinder
EOD26824 No alias Putative histone H2B [Ensembl]. 0.01 OrthoFinder
EOD41189 No alias Putative histone H2B [Ensembl]. 0.01 OrthoFinder
OT_08G01920.1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
PTI_06G02120.1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
PTI_06G04930.1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
Sro1535_g280540.1 Contig3021.g24091 Histone H2B 0.02 OrthoFinder
Sro1563_g282700.1 Contig1017.g10180 Histone H2B 0.01 OrthoFinder
Sro228_g092710.1 Contig1235.g11585 Histone H2B 0.01 OrthoFinder
Sro470_g149440.1 Contig850.g9338 Histone H2B 0.01 OrthoFinder
TP05G07690.1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.01 OrthoFinder
Vocar.0016s0272.1 32898185 Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
Vocar.0027s0139.1 32887089 Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
Vocar.0028s0099.1 32895722 Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
XM_002503927.1 MICPUN_108622, 108622 Histone H2B 0.02 OrthoFinder
XM_003055466.1 MicpuC2_13212, 13212 Histone H2B 0.02 OrthoFinder
XM_003058473.1 MicpuC2_58125, 58125 Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
XM_003061989.1 MicpuC2_35705, 35705 Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01000287.1_cds_GFH10110.1_4587 HaLaN_05363, GFH10110 Histone H2B 0.01 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57107.1_9026 PRW57107 Histone 0.02 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000723 telomere maintenance IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004100 chitin synthase activity IEP Enrichment
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Enrichment
MF GO:0004612 phosphoenolpyruvate carboxykinase (ATP) activity IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0005975 carbohydrate metabolic process IEP Enrichment
BP GO:0006022 aminoglycan metabolic process IEP Enrichment
BP GO:0006023 aminoglycan biosynthetic process IEP Enrichment
BP GO:0006030 chitin metabolic process IEP Enrichment
BP GO:0006031 chitin biosynthetic process IEP Enrichment
BP GO:0006040 amino sugar metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006468 protein phosphorylation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
MF GO:0008131 primary amine oxidase activity IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Enrichment
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016791 phosphatase activity IEP Enrichment
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019211 phosphatase activator activity IEP Enrichment
MF GO:0030246 carbohydrate binding IEP Enrichment
MF GO:0030247 polysaccharide binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
BP GO:0032200 telomere organization IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035299 inositol pentakisphosphate 2-kinase activity IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0042578 phosphoric ester hydrolase activity IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0046349 amino sugar biosynthetic process IEP Enrichment
MF GO:0048038 quinone binding IEP Enrichment
BP GO:0060249 anatomical structure homeostasis IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:1901071 glucosamine-containing compound metabolic process IEP Enrichment
BP GO:1901073 glucosamine-containing compound biosynthetic process IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
MF GO:2001070 starch binding IEP Enrichment
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 19 99
No external refs found!