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  5. lcl|LHPG02000007.1_cds_PRW56948.1_9006

lcl|LHPG02000007.1_cds_PRW56948.1_9006 (PRW56948)


Aliases : PRW56948

Description : Histone H2A


Gene families : OG_01_0000046 (OrthoFinder) Phylogenetic Tree(s): OG0000046_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000007.1_cds_PRW56948.1_9006
Cluster HCCA: Cluster_66

Target Alias Description ECC score Gene Family Method Actions
Cre06.g264750 30778682, HTA14 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cre06.g264950 30779952 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cre06.g265350 30779523 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cre06.g266700 30779158 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cre06.g268050 30779224, HTA10 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cre06.g268300 30778781, HTA9 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cre06.g271350 30779391 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cre06.g273900 30779778 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cre06.g274200 30778751 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cre06.g274800 30780111, HTA26 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cre06.g275850 30779335 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cre06.g276500 30778822, HTA23 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cre06.g276950 30778754, HTA24 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cre12.g504500 30793209 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cre12.g504750 30792225 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cre12.g505550 30793129 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cre12.g506250 30793152, HTA18 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cre13.g570100 30784159, HTA2 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cre13.g590800 30783997, HTA37 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cre13.g591150 30784726, HTA38 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cre17.g708550 30781878, HTA20 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cre17.g709200 30782358 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cre17.g710400 30782701, HTA19 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cre17.g711700 30781638, HTA5 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cre17.g713400 30781819 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cre17.g714500 30782017, HTA1 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cz02g02050.t1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.02 OrthoFinder
Dusal.0093s00031.1 33185335 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.02 OrthoFinder
Dusal.0093s00037.1 33185342 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.02 OrthoFinder
Dusal.0165s00017.1 33193347 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.02 OrthoFinder
Dusal.0688s00003.1 33202688 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.02 OrthoFinder
Dusal.0806s00004.1 33190343 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.02 OrthoFinder
EOD08304 No alias Putative histone H2A [Ensembl]. 0.02 OrthoFinder
EOD11956 No alias Putative histone H2A [Ensembl]. 0.02 OrthoFinder
EOD22956 No alias Putative histone H2A [Ensembl]. 0.02 OrthoFinder
EOD22963 No alias Putative histone H2A [Ensembl]. 0.02 OrthoFinder
TP03G01190.1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.02 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0004392 heme oxygenase (decyclizing) activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005739 mitochondrion IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006788 heme oxidation IEP Enrichment
MF GO:0008430 selenium binding IEP Enrichment
BP GO:0008535 respiratory chain complex IV assembly IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0016872 intramolecular lyase activity IEP Enrichment
BP GO:0017004 cytochrome complex assembly IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
BP GO:0033108 mitochondrial respiratory chain complex assembly IEP Enrichment
BP GO:0033617 mitochondrial cytochrome c oxidase assembly IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0042168 heme metabolic process IEP Enrichment
BP GO:0042440 pigment metabolic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 10 88
IPR032454 Histone_H2A_C 91 124
No external refs found!