1. Home
  2. Species
  3. Chlorella sorokiniana
  4. Sequence
  5. lcl|LHPG02000006.1_cds_PRW58009.1_8753

lcl|LHPG02000006.1_cds_PRW58009.1_8753 (PRW58009)


Aliases : PRW58009

Description : Type I fatty acid


Gene families : OG_01_0000078 (OrthoFinder) Phylogenetic Tree(s): OG0000078_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000006.1_cds_PRW58009.1_8753
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold5248.2 5248.2 Beta-ketoacyl synthase, C-terminal; Beta-ketoacyl... 0.02 OrthoFinder
Transcript_contig_61658 61658 Hypothetical protein 0.02 OrthoFinder
lcl|BLLF01001312.1_cds_GFH18519.1_12996 HaLaN_15340, GFH18519 Beta-ketoacyl synthase, N-terminal [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Enrichment
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Enrichment
MF GO:0004559 alpha-mannosidase activity IEP Enrichment
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Enrichment
MF GO:0004674 protein serine/threonine kinase activity IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005681 spliceosomal complex IEP Enrichment
BP GO:0006401 RNA catabolic process IEP Enrichment
BP GO:0006402 mRNA catabolic process IEP Enrichment
BP GO:0006835 dicarboxylic acid transport IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
BP GO:0009892 negative regulation of metabolic process IEP Enrichment
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Enrichment
BP GO:0010629 negative regulation of gene expression IEP Enrichment
BP GO:0015711 organic anion transport IEP Enrichment
BP GO:0015740 C4-dicarboxylate transport IEP Enrichment
BP GO:0015743 malate transport IEP Enrichment
MF GO:0015923 mannosidase activity IEP Enrichment
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
BP GO:0046942 carboxylic acid transport IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
InterPro domains Description Start Stop
IPR014030 Ketoacyl_synth_N 4339 4444
IPR014030 Ketoacyl_synth_N 1749 1787
IPR014030 Ketoacyl_synth_N 5787 5992
IPR014030 Ketoacyl_synth_N 1612 1747
IPR014030 Ketoacyl_synth_N 2821 3071
IPR014030 Ketoacyl_synth_N 6689 6929
IPR014030 Ketoacyl_synth_N 795 1024
IPR020807 PKS_dehydratase 4665 4820
IPR020807 PKS_dehydratase 6213 6300
IPR020807 PKS_dehydratase 2027 2165
IPR020807 PKS_dehydratase 3289 3500
IPR013968 PKS_KR 5322 5516
IPR013968 PKS_KR 1240 1287
IPR013968 PKS_KR 6298 6345
IPR013968 PKS_KR 3759 3948
IPR013968 PKS_KR 2303 2485
IPR014031 Ketoacyl_synth_C 6011 6127
IPR014031 Ketoacyl_synth_C 3087 3200
IPR014031 Ketoacyl_synth_C 4455 4574
IPR014031 Ketoacyl_synth_C 1809 1933
IPR014031 Ketoacyl_synth_C 1049 1164
IPR014031 Ketoacyl_synth_C 6938 6997
IPR009081 PP-bd_ACP 597 661
IPR009081 PP-bd_ACP 1395 1458
IPR009081 PP-bd_ACP 4177 4241
IPR009081 PP-bd_ACP 2705 2767
IPR009081 PP-bd_ACP 6442 6505
IPR009081 PP-bd_ACP 4065 4131
IPR009081 PP-bd_ACP 1499 1555
IPR009081 PP-bd_ACP 6561 6623
IPR009081 PP-bd_ACP 2591 2653
IPR009081 PP-bd_ACP 5632 5694
No external refs found!