lcl|LHPG02000006.1_cds_PRW57840.1_8450 (PRW57840)


Aliases : PRW57840

Description : Serine-tRNA ligase


Gene families : OG_01_0002419 (OrthoFinder) Phylogenetic Tree(s): OG0002419_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000006.1_cds_PRW57840.1_8450
Cluster HCCA: Cluster_95

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020610.57 tig00020610_g12000.t1 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.04 OrthoFinder
Cre03.g189400 30786696 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.06 OrthoFinder
Cz01g38170.t1 No alias Aminoacyl-tRNA synthetase, class II (G/ P/ S/T);... 0.05 OrthoFinder
Dusal.0025s00009.1 33200702 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T);... 0.05 OrthoFinder
EOD24043 No alias Seryl-tRNA synthetase [Ensembl]. 0.04 OrthoFinder
OT_08G02010.1 No alias Serine-tRNA synthetase, type1, N-terminal;... 0.05 OrthoFinder
PTI_24G00410.1 No alias Serine-tRNA synthetase, type1, N-terminal;... 0.04 OrthoFinder
Sro251_g099270.1 Contig687.g8007 Serine--tRNA ligase 0.03 OrthoFinder
Sro31_g020380.1 Contig420.g5633 Serine--tRNA ligase 0.05 OrthoFinder
TP09G00290.1 No alias Aminoacyl-tRNA synthetase, class II (G/ P/ S/T);... 0.03 OrthoFinder
Transcript_contig_89332 89332 Serine-tRNA synthetase, type1, N-terminal;... 0.03 OrthoFinder
Vocar.0011s0152.1 32895496 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T);... 0.02 OrthoFinder
XM_002501349.1 MICPUN_80937, 80937 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T);... 0.03 OrthoFinder
XM_003058846.1 MicpuC2_44315, 44315 Serine-tRNA synthetase, type1, N-terminal;... 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0004812 aminoacyl-tRNA ligase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006418 tRNA aminoacylation for protein translation IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Enrichment
BP GO:0000105 histidine biosynthetic process IEP Enrichment
MF GO:0000287 magnesium ion binding IEP Enrichment
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003682 chromatin binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003879 ATP phosphoribosyltransferase activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004484 mRNA guanylyltransferase activity IEP Enrichment
MF GO:0004664 prephenate dehydratase activity IEP Enrichment
MF GO:0004826 phenylalanine-tRNA ligase activity IEP Enrichment
MF GO:0004843 thiol-dependent deubiquitinase IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
CC GO:0005956 protein kinase CK2 complex IEP Enrichment
BP GO:0006338 chromatin remodeling IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006370 7-methylguanosine mRNA capping IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006432 phenylalanyl-tRNA aminoacylation IEP Enrichment
BP GO:0006547 histidine metabolic process IEP Enrichment
BP GO:0006558 L-phenylalanine metabolic process IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
MF GO:0008192 RNA guanylyltransferase activity IEP Enrichment
MF GO:0008242 omega peptidase activity IEP Enrichment
MF GO:0008452 RNA ligase activity IEP Enrichment
BP GO:0008652 cellular amino acid biosynthetic process IEP Enrichment
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Enrichment
BP GO:0009094 L-phenylalanine biosynthetic process IEP Enrichment
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP Enrichment
BP GO:0009452 7-methylguanosine RNA capping IEP Enrichment
BP GO:0016053 organic acid biosynthetic process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
MF GO:0019207 kinase regulator activity IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
MF GO:0019887 protein kinase regulator activity IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
BP GO:0022618 ribonucleoprotein complex assembly IEP Enrichment
MF GO:0031369 translation initiation factor binding IEP Enrichment
MF GO:0031491 nucleosome binding IEP Enrichment
MF GO:0031625 ubiquitin protein ligase binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0036260 RNA capping IEP Enrichment
BP GO:0043044 ATP-dependent chromatin remodeling IEP Enrichment
MF GO:0044389 ubiquitin-like protein ligase binding IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0046394 carboxylic acid biosynthetic process IEP Enrichment
MF GO:0070568 guanylyltransferase activity IEP Enrichment
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0101005 deubiquitinase activity IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP Enrichment
BP GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR002314 aa-tRNA-synt_IIb 225 414
IPR015866 Ser-tRNA-synth_1_N 1 112
No external refs found!