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  5. lcl|LHPG02000006.1_cds_PRW57807.1_8598

lcl|LHPG02000006.1_cds_PRW57807.1_8598 (PRW57807)


Aliases : PRW57807

Description : Exosome component 10


Gene families : OG_01_0000497 (OrthoFinder) Phylogenetic Tree(s): OG0000497_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000006.1_cds_PRW57807.1_8598
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
Cre12.g512250 30792639 RNA processing.RNA decay.exosome complex.associated... 0.04 OrthoFinder
Cz08g12100.t1 No alias HRDC domain; 3'-5' exonuclease domain [Interproscan]. 0.04 OrthoFinder
Dusal.0916s00003.1 33190594 Exosome-associated factor Rrp6, N-terminal; 3'-5'... 0.02 OrthoFinder
Transcript_contig_54520 54520 3'-5' exonuclease domain; HRDC domain [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
BP GO:0006139 nucleobase-containing compound metabolic process IEA Interproscan
MF GO:0008408 3'-5' exonuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0002098 tRNA wobble uridine modification IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Enrichment
MF GO:0004402 histone acetyltransferase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0005992 trehalose biosynthetic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
BP GO:0008272 sulfate transport IEP Enrichment
MF GO:0008276 protein methyltransferase activity IEP Enrichment
MF GO:0008509 anion transmembrane transporter activity IEP Enrichment
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Enrichment
MF GO:0015116 sulfate transmembrane transporter activity IEP Enrichment
BP GO:0015698 inorganic anion transport IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016278 lysine N-methyltransferase activity IEP Enrichment
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Enrichment
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0017025 TBP-class protein binding IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Enrichment
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
CC GO:0033588 elongator holoenzyme complex IEP Enrichment
MF GO:0034212 peptide N-acetyltransferase activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0042054 histone methyltransferase activity IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043545 molybdopterin cofactor metabolic process IEP Enrichment
BP GO:0046351 disaccharide biosynthetic process IEP Enrichment
BP GO:0051189 prosthetic group metabolic process IEP Enrichment
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Enrichment
BP GO:0072348 sulfur compound transport IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140296 general transcription initiation factor binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Enrichment
InterPro domains Description Start Stop
IPR002121 HRDC_dom 460 527
IPR002562 3'-5'_exonuclease_dom 228 389
No external refs found!